Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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exome alignment and somatic variant detection for cle purpose
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/somatic_exome_cle.cwl Branch/Commit ID: master |
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cnv_exomedepth
CNV ExomeDepth calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/cnv_exome_depth.cwl Branch/Commit ID: 1.0.7 |
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panel of normals workflow
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https://github.com/hamid58b/cancer-genomics-workflow.git
Path: panel_of_normals/workflow.cwl Branch/Commit ID: master |
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Detect Variants workflow
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https://github.com/hamid58b/cancer-genomics-workflow.git
Path: detect_variants/detect_variants.cwl Branch/Commit ID: master |
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deal_with_functional_annotation.cwl
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https://github.com/kinow/pipeline-v5.git
Path: workflows/subworkflows/assembly/deal_with_functional_annotation.cwl Branch/Commit ID: eosc-life-gos |
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varscan somatic workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: master |
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wf_full_IDR_pipeline_1input_scatter.cwl
The main workflow that: produces two reproducible peaks via IDR given two eCLIP samples (1 input, 1 IP each). runs the 'rescue ratio' statistic runs the 'consistency ratio' statistic |
https://github.com/YeoLab/merge_peaks.git
Path: cwl/wf_full_IDR_pipeline_1input_scatter.cwl Branch/Commit ID: master |
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preprocess.cwl
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https://github.com/NCBI-Hackathons/Epigenomics_CWL.git
Path: cwl/tools/preprocess.cwl Branch/Commit ID: master |
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bam to trimmed fastqs and biscuit alignments
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl Branch/Commit ID: master |
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AccceptParameter
accept a simulation model parameter (or set of parameters) as validated and to be used in future MC productions. |
https://github.com/gammasim/workflows.git
Path: workflows/AccceptParameter.cwl Branch/Commit ID: main |
