Explore Workflows
View already parsed workflows here or click here to add your own
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rRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/rRNA_selection.cwl Branch/Commit ID: 71d9c83 |
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EMG pipeline v3.0 (single end version)
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3.cwl Branch/Commit ID: 5833078 |
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SVision-Pro workflow for structural variant detection in cancer samples
A workflow that uses SVision-Pro to identify structural variants in tumor/normal paired samples from Oxford Nanopore Technology (ONT) long-read sequencing data. |
https://github.com/bio-ontology-research-group/crc.git
Path: workflow/main.cwl Branch/Commit ID: main |
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TransDecoder 2 step workflow, running TransDecoder.LongOrfs (step 1) followed by TransDecoder.Predict (step2)
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https://github.com/EBI-Metagenomics/workflow-is-cwl.git
Path: workflows/TransDecoder-v5-wf-2steps.cwl Branch/Commit ID: master |
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Chunked version of phmmer-v3.2.cwl
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https://github.com/EBI-Metagenomics/workflow-is-cwl.git
Path: workflows/phmmer-v3.2-chunked-wf.cwl Branch/Commit ID: assembly |
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star_samtools_stringtie-prepDE-DESeq2.htseq-dexseq.cwl
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https://github.com/rawgene/cwl.git
Path: workflows/star_samtools_stringtie-prepDE-DESeq2.htseq-dexseq.cwl Branch/Commit ID: master |
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EMG pipeline v3.0 (paired end version)
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3-paired.cwl Branch/Commit ID: master |
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biowardrobe_chipseq_se.cwl
The workflow is used to run CHIP-Seq basic analysis with single-end input FASTQ file. In outputs it returns coordinate sorted BAM file alongside with index BAI file, quality statistics of the input FASTQ file, reads coverage in a form of bigWig file, peaks calling data in a form of narrowPeak or broadPeak files. |
https://github.com/Barski-lab/ga4gh_challenge.git
Path: biowardrobe_chipseq_se.cwl Branch/Commit ID: v0.0.3 |
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ProteinInferenceWorkflow.cwl
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https://github.com/adamscharlotte/CWL-workflow.git
Path: ProteinInferenceWorkflow.cwl Branch/Commit ID: master |
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cmsearch-multimodel.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/cmsearch-multimodel.cwl Branch/Commit ID: c1f8b22 |
