Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Genelists heatmap - peak and expression data visualized together

# Genelists heatmap - peak and expression data visualized together This visualization workflow takes as input 1 or more genelists derived from the DESeq and/or diffbind workflows along with user-selected samples and visualizes the ChIP/ATAC-Seq peak and/or RNA-Seq expression data visualized together in a single morpheus heatmap. ### __References__ - Morpheus, https://software.broadinstitute.org/morpheus

 https://github.com/datirium/workflows.git

Path: workflows/genelists-deseq-diffbind.cwl

Branch/Commit ID: d76110e0bfc40c874f82e37cef6451d74df4f908
workflow graph example_workflow.cwl

Example CWL workflow that uses some advanced features

https://github.com/mskcc/pluto-cwl.git

Path: cwl/example_workflow.cwl

Branch/Commit ID: ba3ff09328cc646d7254b2d2ee0fbe1abca3d4ad
workflow graph ValidateArrayElementCoordinates

Plot and compare array element coordinates. Validate coordinate transformation from those used in observatory database to simulation systems.

 https://github.com/gammasim/workflows.git

Path: workflows/ValidateArrayElementCoordinates.cwl

Branch/Commit ID: cc9902d92de18a6b2bf83dfbc50201cf1b7477b4
workflow graph step_valuefrom5_wf_with_id_v1_2.cwl

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/step_valuefrom5_wf_with_id_v1_2.cwl

Branch/Commit ID: 8058c7477097f90205dd7d8481781eb3737ea9c9
workflow graph align_sort_sa

https://github.com/ncbi/pgap.git

Path: task_types/tt_align_sort_sa.cwl

Branch/Commit ID: 8fb4ac7f5a66897206c7469101a471108b06eada
workflow graph Detect Variants workflow for WGS pipeline

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/detect_variants_wgs.cwl

Branch/Commit ID: 22fce2dbdada0c4135b6f0677f78535cf980cb07
workflow graph scatter-wf4.cwl#main

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/scatter-wf4.cwl

Branch/Commit ID: f207d168f4e7eb4dd2279840d4062ba75d9c79c3

Packed ID: main
workflow graph Filter DiffBind results for deepTools heatmap analysis

Filter DiffBind results for deepTools heatmap analysis ====================================================== Filter differentially bound sites from DiffBind analysis to be used with deepTools heatmap analysis

 https://github.com/datirium/workflows.git

Path: workflows/filter-diffbind-for-heatmap.cwl

Branch/Commit ID: 7030da528559c7106d156284e50ff0ecedab0c4e
workflow graph count-lines4-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/count-lines4-wf.cwl

Branch/Commit ID: f207d168f4e7eb4dd2279840d4062ba75d9c79c3
workflow graph super-enhancer.cwl

Both `islands_file` and `islands_control_file` should be produced by the same cwl tool (iaintersect.cwl or macs2-callpeak-biowardrobe-only.cwl)

https://github.com/Barski-lab/workflows.git

Path: workflows/super-enhancer.cwl

Branch/Commit ID: e706ffe742cfdf713c4315ab2fb56d07f7e688cb