Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	align_and_count_multiple_report.cwl	https://github.com/common-workflow-lab/wdl-cwl-translator.git Path: wdl2cwl/tests/cwl_files/align_and_count_multiple_report.cwl Branch/Commit ID: 471bf44b717b69b108fc6d13bc71fac55827d1dd
	wgs alignment and germline variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/germline_wgs.cwl Branch/Commit ID: 6f9f8a2057c6a9f221a44559f671e87a75c70075
	count-lines5-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/count-lines5-wf.cwl Branch/Commit ID: 7ec307b01442936fad9b1149f4500496557505ff
	Bisulfite QC tools	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bisulfite_qc.cwl Branch/Commit ID: da335d9963418f7bedd84cb2791a0df1b3165ffe
	FastQC - a quality control tool for high throughput sequence data FastQC - a quality control tool for high throughput sequence data ===================================== FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. It provides a modular set of analyses which you can use to give a quick impression of whether your data has any problems of which you should be aware before doing any further analysis. The main functions of FastQC are: - Import of data from FastQ files (any variant) - Providing a quick overview to tell you in which areas there may be problems - Summary graphs and tables to quickly assess your data - Export of results to an HTML based permanent report - Offline operation to allow automated generation of reports without running the interactive application	https://github.com/datirium/workflows.git Path: workflows/fastqc.cwl Branch/Commit ID: 7030da528559c7106d156284e50ff0ecedab0c4e
	Vcf concordance evaluation workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/vcf_eval_concordance.cwl Branch/Commit ID: b7d9ace34664d3cedb16f2512c8a6dc6debfc8ca
	SetPhotonDelay Derive additional delay of photon arrival times at the photodetectors.	https://github.com/gammasim/workflows.git Path: workflows/SetPhotonDelay.cwl Branch/Commit ID: bf4d4a44a543bcc04f4508ce020751c71550acf5
	mut2.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/mut2.cwl Branch/Commit ID: 639229b1159cf484e70e52da10194561b3fad719
	revsort.cwl Reverse the lines in a document, then sort those lines.	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/revsort.cwl Branch/Commit ID: 1b5633876aabd4cb57ef3f1fe91c853f3ee82e46
	Subworkflow to allow calling cnvkit with cram instead of bam files	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cram_to_cnvkit.cwl Branch/Commit ID: ddb49a0951d9ad537269d7db3fe8f904495a8bf4