Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
sum-wf-noET.cwl
|
https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/sum-wf-noET.cwl Branch/Commit ID: main |
|
|
|
EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
|
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: c1f8b22 |
|
|
|
Varscan Workflow
|
https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/subworkflows/varscan_pre_and_post_processing.cwl Branch/Commit ID: low-vaf |
|
|
|
wf_amr_prot.cwl
|
https://github.com/ncbi/pipelines.git
Path: amr_finder/wf_amr_prot.cwl Branch/Commit ID: master |
|
|
|
gatk4W.cwl
Author: AMBARISH KUMAR er.ambarish@gmail.com & ambari73_sit@jnu.ac.in This is a proposed standard operating procedure for genomic variant detection using GATK4. It is hoped to be effective and useful for getting SARS-CoV-2 genome variants. It uses Illumina RNASEQ reads and genome sequence. |
https://github.com/ambarishK/bio-cwl-tools.git
Path: gatk4W.cwl Branch/Commit ID: release |
|
|
|
merge-bam-parallel
This workflow merge BAM files per condition in parallel |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/File-formats/merge-bam-parallel.cwl Branch/Commit ID: master |
|
|
|
collate_unique_SSU_headers.cwl
|
https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: 135976d |
|
|
|
EMG pipeline v3.0 (single end version)
|
https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3.cwl Branch/Commit ID: master |
|
|
|
portal-workflow.cwl
|
https://github.com/mskcc/pluto-cwl.git
Path: cwl/portal-workflow.cwl Branch/Commit ID: master |
|
|
|
per_cluster_workflow.cwl
|
https://github.com/FarahZKhan/scalability-reproducibility-chapter.git
Path: CWL/per_cluster_workflow.cwl Branch/Commit ID: master |
