Explore Workflows
View already parsed workflows here or click here to add your own
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HBA_calibrator.cwl
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Path: workflows/HBA_calibrator.cwl Branch/Commit ID: 96f1caf46ca4859e7cb49919dcb13bf53abf4393 |
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io-int-default-wf.cwl
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Path: tests/io-int-default-wf.cwl Branch/Commit ID: 4feec74019b56dc5c51be905a208ff90797661de |
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dynresreq-workflow-inputdefault.cwl
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Path: tests/dynresreq-workflow-inputdefault.cwl Branch/Commit ID: 4feec74019b56dc5c51be905a208ff90797661de |
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BuildCembaReferences.cwl
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Path: wdl2cwl/tests/cwl_files/BuildCembaReferences.cwl Branch/Commit ID: fac9e1a4363b6d35a4a62fdf75d58c997be8790d |
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Process DL0 to DL2
Process an input file to from DL0 to separate DL1 and DL2 outputs. |
Path: datapipe/workflow_dl0_to_dl2.cwl Branch/Commit ID: 9e14db6574fcec5dd8f4f965c31bffe8e8313366 |
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811-12.cwl
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Path: tests/wf/811-12.cwl Branch/Commit ID: 6b1b15c0c54846d8e765893f0931b97410263e10 |
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cram_to_bam workflow
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Path: definitions/subworkflows/cram_to_bam_and_index.cwl Branch/Commit ID: a9133c999502acf94b433af8d39897e6c2cdf65f |
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autosubmit.cwl
An example workflow created using Autosubmit's basic a000 workflow as reference. The `platform.yml` is ignored as it contains only information about platforms (e.g. it could be given to a tool like Troika as-is). `expdef.yml` and `autosubmit.yml` basically provide CWL inputs. `jobs.yml` contains the steps of the CWL workflow, with their dependencies. In CWL dependencies are specified via inputs and outputs. When task A outputs a value X, and task B has an input of type A/X, then the dependency A -> B is created in CWl. This is different than Autosubmit, and needs some care to guarantee the correct order in the workflow graph of start dates, members, chunks, etc. |
Path: notes/autosubmit/autosubmit.cwl Branch/Commit ID: 97bfab3944137a0cc60f44a278090b1ffdc02a10 |
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workflow_inputs.cwl
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Path: wdl2cwl/tests/cwl_files/workflow_inputs.cwl Branch/Commit ID: fac9e1a4363b6d35a4a62fdf75d58c997be8790d |
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Hello World
Outputs a message using echo |
Path: tests/wf/hello-workflow.cwl Branch/Commit ID: 6b1b15c0c54846d8e765893f0931b97410263e10 |
