Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	exome alignment with qc	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/exome_alignment.cwl Branch/Commit ID: 051074fce4afd9732ef34db9dd43d3a1d8e979d6
	Subworkflow that runs cnvkit in single sample mode and returns a vcf file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: b7d9ace34664d3cedb16f2512c8a6dc6debfc8ca
	tt_fscr_calls_pass1	https://github.com/ncbi/pgap.git Path: task_types/tt_fscr_calls_pass1.cwl Branch/Commit ID: 953d7866bc70e14c02a6bb8c5a72305caa823bfc
	conflict.cwl#main	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/conflict.cwl Branch/Commit ID: efb40a812cdba2df6699f130ee5aeea9b63045cd Packed ID: main
	Feature expression merge - combines feature expression from several experiments Feature expression merge - combines feature expression from several experiments ========================================================================= Workflows merges RPKM (by default) gene expression from several experiments based on the values from GeneId, Chrom, TxStart, TxEnd and Strand columns (by default). Reported unique columns are renamed based on the experiments names.	https://github.com/datirium/workflows.git Path: workflows/feature-merge.cwl Branch/Commit ID: bf80c9339d81a78aefb8de661bff998ed86e836e
	scatter-valuefrom-wf6.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/scatter-valuefrom-wf6.cwl Branch/Commit ID: 65aedc5e7e1f3ccace7f9022f8a54b3f0d5c9a8c
	conflict-wf.cwl#collision	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/conflict-wf.cwl Branch/Commit ID: c6cced7a2e6389d2eb43342e702677ccb7c7497c Packed ID: collision
	genome-kallisto-index.cwl Generates a FASTA file with the DNA sequences for all transcripts in a GFF file and builds kallisto index	https://github.com/Barski-lab/workflows.git Path: tools/genome-kallisto-index.cwl Branch/Commit ID: 80d64741638b14de5cf58236b6d6d99713c62086
	stdout-wf_v1_0.cwl	https://github.com/common-workflow-language/cwl-utils.git Path: testdata/stdout-wf_v1_0.cwl Branch/Commit ID: 7af75226f084349e401b1114f25bdcdee060e127
	grepsort workflow a workflow that performs grep followed by sort	https://github.com/ResearchObject/runcrate.git Path: tests/data/grepsort-run-1/snapshot/grepsort.cwl Branch/Commit ID: 376f6b2c6332a4742d4512d6e1fb785a2f8b7285