Explore Workflows
View already parsed workflows here or click here to add your own
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Build Bismark indices
Copy fasta_file file to the folder and run run bismark_genome_preparation script to prepare indices for Bismark Methylation Analysis. Bowtie2 aligner is used by default. The name of the output indices folder is equal to the genome input. |
https://github.com/datirium/workflows.git
Path: workflows/bismark-index.cwl Branch/Commit ID: ce058d892d330125cd03d0a0d5fb3b321cda0be3 |
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format_rrnas_from_seq_entry
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https://github.com/ncbi/pgap.git
Path: task_types/tt_format_rrnas_from_seq_entry.cwl Branch/Commit ID: 49732e54e2fe2eafd2f82df3c482c73e642f6d64 |
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cluster_blastp_wnode and gpx_qdump combined
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https://github.com/ncbi/pgap.git
Path: task_types/tt_cluster_and_qdump.cwl Branch/Commit ID: 2afb5ebafd1353ba063cc74ee9a7eaf347afce5c |
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cache_asnb_entries
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https://github.com/ncbi/pgap.git
Path: task_types/tt_cache_asnb_entries.cwl Branch/Commit ID: ce433f771ebf5677c9f40858e2ae91b1a7e75d30 |
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count-lines11-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines11-wf.cwl Branch/Commit ID: e9c83739a93fa0b18f8dea2f98b632a9e32725c9 |
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count-lines7-wf_v1_0.cwl
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https://github.com/common-workflow-language/cwl-utils.git
Path: testdata/count-lines7-wf_v1_0.cwl Branch/Commit ID: 0ab1d42d10f7311bb4032956c4a6f3d2730d9507 |
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wgs alignment and tumor-only variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/tumor_only_wgs.cwl Branch/Commit ID: 844c10a4466ab39c02e5bfa7a210c195b8efa77a |
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tt_kmer_top_n.cwl
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_top_n.cwl Branch/Commit ID: e3f18c61d1bbf65e40921dbd044369da4523ee3e |
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record-output-wf_v1_2.cwl
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https://github.com/common-workflow-language/cwl-utils.git
Path: testdata/record-output-wf_v1_2.cwl Branch/Commit ID: 0ab1d42d10f7311bb4032956c4a6f3d2730d9507 |
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conflict.cwl#main
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/conflict.cwl Branch/Commit ID: 8ef515037de411abd2f84b569ad4d4a4f7a2c7a0 Packed ID: main |
