Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph align_merge_sas

https://github.com/ncbi/pgap.git

Path: task_types/tt_align_merge_sas.cwl

Branch/Commit ID: cc7fb3e5c534036638921878527a610fd5e1c2ab
workflow graph count-lines1-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/count-lines1-wf.cwl

Branch/Commit ID: 256306a5da1eb0a8391d5f6734e7baae96922079
workflow graph Compute library complexity

This workflow compute library complexity

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/File-formats/bedtools-bam-pbc.cwl

Branch/Commit ID: b5a440939ac6022ee81aeeb0dd7daf3983228a61
workflow graph PGAP Pipeline

PGAP pipeline for external usage, powered via containers

 https://github.com/ncbi/pgap.git

Path: wf_common.cwl

Branch/Commit ID: d40ef1462a4c210be3184609dbb3467ff61fc017
workflow graph STAR-Alignment-PE

This workflow aligns the fastq files using STAR for no spliced genomes

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Alignments/star-alignment-nosplice.cwl

Branch/Commit ID: b5a440939ac6022ee81aeeb0dd7daf3983228a61
workflow graph BAM to BEDPE

Comvert BAM to BEDPE and compress the output

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/File-formats/bamtobedpe-gzip.cwl

Branch/Commit ID: f37e1346f1d48fe9f2b9282e37997a2e3ffed7e2
workflow graph kmer_cache_retrieve

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_cache_retrieve.cwl

Branch/Commit ID: 8c21035bff3cbffccf5682bd0357a6d71f3bdb81
workflow graph protein_extract

https://github.com/ncbi/pgap.git

Path: progs/protein_extract.cwl

Branch/Commit ID: 8c21035bff3cbffccf5682bd0357a6d71f3bdb81
workflow graph workflow_input_format_expr_v1_1.cwl

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/workflow_input_format_expr_v1_1.cwl

Branch/Commit ID: 513bf79c9e3ba98306006a87165de18bac7c04ee
workflow graph pipeline.cwl

https://github.com/hubmapconsortium/azimuth-annotate.git

Path: pipeline.cwl

Branch/Commit ID: 86b0951cf0be54ad22e95948e9bc778d12936860