Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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cond-wf-011_nojs.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/conditionals/cond-wf-011_nojs.cwl Branch/Commit ID: main |
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inp_update_wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/inp_update_wf.cwl Branch/Commit ID: main |
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metabarcode (gene amplicon) analysis for fastq files
protein - qc, preprocess, annotation, index, abundance |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/metabarcode-fastq.workflow.cwl Branch/Commit ID: master |
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sam_to_fastq_workflow.cwl
sam to fastq workflow |
https://github.com/CRI-iAtlas/iatlas-workflows.git
Path: Sam_to_Fastq/workflow/sam_to_fastq_workflow.cwl Branch/Commit ID: develop |
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minibam_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
https://github.com/svonworl/OxoG-Dockstore-Tools.git
Path: minibam_sub_wf.cwl Branch/Commit ID: develop |
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scRNA-seq pipeline using Salmon and Alevin
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: pipeline.cwl Branch/Commit ID: 9225fa2 |
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standard_pipeline.cwl
This is a workflow to go from UMI-tagged fastqs to standard bams. It does not include collapsing, or QC It does include modules 1 and 2 |
https://github.com/mskcc/Innovation-Pipeline.git
Path: workflows/standard_pipeline.cwl Branch/Commit ID: master |
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biscuit_trim_align_dedup_sort_merge.cwl
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https://github.com/CompEpigen/PipelineOlympics.git
Path: CWL/workflows/Biscuit/tools/biscuit_trim_align_dedup_sort_merge.cwl Branch/Commit ID: main |
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tt_univec_wnode.cwl
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https://github.com/ncbi/pgap.git
Path: task_types/tt_univec_wnode.cwl Branch/Commit ID: master |
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Seed Protein Alignments
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_seed_seqids.cwl Branch/Commit ID: master |
