Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	strelka workflow	https://github.com/apaul7/cancer-genomics-workflow.git Path: definitions/subworkflows/strelka_and_post_processing.cwl Branch/Commit ID: low-vaf
	Unaligned BAM to BQSR	https://github.com/tmooney/cancer-genomics-workflow.git Path: definitions/subworkflows/bam_to_bqsr.cwl Branch/Commit ID: downsample_and_recall
	WES GATK4 Preprocessing Whole Exome Sequence analysis GATK4 Preprocessing	https://github.com/Duke-GCB/bespin-cwl.git Path: workflows/exomeseq-gatk4-preprocessing.cwl Branch/Commit ID: master
	cond-wf-010_nojs.cwl	https://github.com/common-workflow-language/cwl-v1.2.git Path: tests/conditionals/cond-wf-010_nojs.cwl Branch/Commit ID: main
	packed_no_main.cwl#collision	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/packed_no_main.cwl Branch/Commit ID: main Packed ID: collision
	STAR-Alignment-PE-circRNA This workflow aligns the fastq files using STAR for paired-end samples to be used in circRNA pipeline	https://github.com/ncbi/cwl-ngs-workflows-cbb.git Path: workflows/Alignments/star-alignment-circRNA-default.cwl Branch/Commit ID: master
	WGS QC workflow mouse	https://github.com/tmooney/cancer-genomics-workflow.git Path: definitions/subworkflows/qc_wgs_mouse.cwl Branch/Commit ID: downsample_and_recall
	gathered exome alignment and somatic variant detection for cle purpose	https://github.com/tmooney/cancer-genomics-workflow.git Path: definitions/pipelines/somatic_exome_cle_gathered.cwl Branch/Commit ID: downsample_and_recall
	Bisulfite alignment and QC	https://github.com/tmooney/cancer-genomics-workflow.git Path: definitions/pipelines/bisulfite.cwl Branch/Commit ID: downsample_and_recall
	EMG pipeline v3.0 (single end version)	https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git Path: workflows/emg-pipeline-v3.cwl Branch/Commit ID: master

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