Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: f993cad |
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Whole Exome Sequencing
Whole Exome Sequence analysis using GATK best practices - Germline SNP & Indel Discovery |
https://github.com/Duke-GCB/bespin-cwl.git
Path: workflows/exomeseq.cwl Branch/Commit ID: master |
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bwameth_singlelib_start_with_trimmed.cwl
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https://github.com/ifishlin/Benchmarking_CWL.git
Path: workflows/bwameth/bwameth_singlelib_start_with_trimmed.cwl Branch/Commit ID: main |
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tnhc-distr.cwl
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https://github.com/Sentieon/Sentieon-cwl.git
Path: stage/tnhc-distr.cwl Branch/Commit ID: master |
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BD Rhapsody™ Targeted Analysis Pipeline
The BD Rhapsody™ assays are used to create sequencing libraries from single cell transcriptomes. After sequencing, the analysis pipeline takes the FASTQ files and a reference file for gene alignment. The pipeline generates molecular counts per cell, read counts per cell, metrics, and an alignment file. |
https://github.com/longbow0/cwl.git
Path: v1.8/rhapsody_targeted_1.8.cwl Branch/Commit ID: master Packed ID: main |
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protein_extract
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https://github.com/ncbi/pgap.git
Path: progs/protein_extract.cwl Branch/Commit ID: dev |
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collate_unique_SSU_headers.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: 0cf06f1 |
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01-qc-se.cwl
ATAC-seq 01 QC - reads: SE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/01-qc-se.cwl Branch/Commit ID: v1.0 |
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EMG pipeline v3.0 (single end version)
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3.cwl Branch/Commit ID: 5e82174 |
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alignment_workflow_md5checker.cwl
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https://github.com/databiosphere/topmed-workflows.git
Path: aligner/topmed-cwl/workflow/alignment_workflow_md5checker.cwl Branch/Commit ID: 1.32.0 |
