Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	trim-rnaseq-pe.cwl Runs RNA-Seq BioWardrobe basic analysis with pair-end data file.	https://github.com/Barski-lab/workflows.git Path: workflows/trim-rnaseq-pe.cwl Branch/Commit ID: ca2dbb71d0537b1d93a8bd44719250cf8949b157
	scatter-valuefrom-wf4.cwl#main	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/scatter-valuefrom-wf4.cwl Branch/Commit ID: 7c7615c44b80f8e76e659433f8c7875603ae0b25 Packed ID: main
	js-expr-req-wf.cwl#wf	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/js-expr-req-wf.cwl Branch/Commit ID: 1e5ad10c6b0d1c5f531737d12ef64062a00baef2 Packed ID: wf
	Nested workflow example	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/nested.cwl Branch/Commit ID: ead263db0e167db39ddbdc79b04d343943d129b6
	bam_filtering BAM filtering	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/cwl/subworkflows/bam_filtering.cwl Branch/Commit ID: 6ccec9c5c5bc9fb4e75ca0b9cc22d13df9ffb815
	Run pindel on provided region	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pindel_region.cwl Branch/Commit ID: b7d9ace34664d3cedb16f2512c8a6dc6debfc8ca
	scatter-wf4.cwl#main	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/scatter-wf4.cwl Branch/Commit ID: efb40a812cdba2df6699f130ee5aeea9b63045cd Packed ID: main
	gathered exome alignment and somatic variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome_gathered.cwl Branch/Commit ID: 8dc462a7d9ba1479f764682af99c69d8574cb3dc
	heatmap.cwl Generates ATDP heatmap centered on TSS from an array of input BAM files and genelist TSV file. Returns array of heatmap JSON files with the names that have the same basenames as input BAM files, but with .json extension	https://github.com/Barski-lab/workflows.git Path: workflows/heatmap.cwl Branch/Commit ID: dcf683418d101917852b1711a91af817d4ea5d03
	tt_kmer_top_n.cwl	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_top_n.cwl Branch/Commit ID: 0bc1c33a2293e054ad00974971edc79c13252cc7