Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph WGS QC workflow nonhuman

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/qc_wgs_nonhuman.cwl

Branch/Commit ID: low-vaf
workflow graph Salmon quantification, FASTQ -> H5AD count matrix

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: steps/salmon-quantification.cwl

Branch/Commit ID: 1550b3e
workflow graph Apply filters to VCF file

https://github.com/genome/cancer-genomics-workflow.git

Path: detect_variants/filter_vcf.cwl

Branch/Commit ID: toil_compatibility
workflow graph alignment_workflow.cwl

https://github.com/uc-cdis/topmed-cwl.git

Path: aligner/functional-equivalence/workflow/alignment_workflow.cwl

Branch/Commit ID: master
workflow graph pipeline.cwl

https://github.com/hubmapconsortium/ims-mxif-pipeline.git

Path: pipeline.cwl

Branch/Commit ID: master
workflow graph wf_calculate_models_1.cwl

https://github.com/idaks/cwl_modeling.git

Path: yw_cwl_modeling/yw_cwl_parser_old/Examples/calculate_models/wf_calculate_models_1.cwl

Branch/Commit ID: master
workflow graph qiime2 diversity analyses

Alpha and beta diversity analysis

 https://github.com/bespin-workflows/16s-qiime2.git

Path: subworkflows/qiime2-paired-alpha-beta-diversity.cwl

Branch/Commit ID: develop
workflow graph qiime2 create phylogenetic tree

Generate a tree for phylogenetic diversity analyses from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-deblur.cwl

Branch/Commit ID: qiime2-workflow-paired

Packed ID: qiime2-05-phylogeny.cwl
workflow graph 01-qc-se.cwl

ChIP-seq 01 QC - reads: SE

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ChIP-seq_pipeline/01-qc-se.cwl

Branch/Commit ID: master
workflow graph pipeline.cwl

https://github.com/hubmapconsortium/azimuth-annotate.git

Path: pipeline.cwl

Branch/Commit ID: d1cc262