Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Super-enhancer post ChIP-Seq analysis Super-enhancers, consist of clusters of enhancers that are densely occupied by the master regulators and Mediator. Super-enhancers differ from typical enhancers in size, transcription factor density and content, ability to activate transcription, and sensitivity to perturbation. Use to create stitched enhancers, and to separate super-enhancers from typical enhancers using sequencing data (.bam) given a file of previously identified constituent enhancers (.gff)	https://github.com/datirium/workflows.git Path: workflows/super-enhancer.cwl Branch/Commit ID: 2b8146f76595f0c4d8bf692de78b21280162b1d0
	umi duplex alignment fastq workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/umi_duplex_alignment.cwl Branch/Commit ID: 1560e7817fdb71d58aca7f98aba68809d840ade1
	count-lines8-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/count-lines8-wf.cwl Branch/Commit ID: 7ec307b01442936fad9b1149f4500496557505ff
	Varscan Workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: b7d9ace34664d3cedb16f2512c8a6dc6debfc8ca
	count-lines13-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/count-lines13-wf.cwl Branch/Commit ID: b82ce7ae901a54c7a062fd5eefd8d5ceb5a4d684
	count-lines7-wf.cwl	https://github.com/common-workflow-language/common-workflow-language.git Path: v1.0/v1.0/count-lines7-wf.cwl Branch/Commit ID: 4fd45edb9531a03223c18a586e32d0baf0d5acb2
	gcaccess_from_list	https://github.com/ncbi/pgap.git Path: task_types/tt_gcaccess_from_list.cwl Branch/Commit ID: 4a44218a713aecc488359be275409414ae8c1434
	Whole genome alignment and somatic variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_wgs.cwl Branch/Commit ID: a59a803e1809a8fbfabca6b8962a8ad66dd01f1d
	Cell Ranger ARC Aggregate Cell Ranger ARC Aggregate =========================	https://github.com/datirium/workflows.git Path: workflows/cellranger-arc-aggr.cwl Branch/Commit ID: ebbf23764ede324cabc064bd50647c1f643726fa
	rnaseq-pe.cwl Runs RNA-Seq BioWardrobe basic analysis with pair-end data file.	https://github.com/Barski-lab/workflows.git Path: workflows/rnaseq-pe.cwl Branch/Commit ID: e706ffe742cfdf713c4315ab2fb56d07f7e688cb