Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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pipeline-pe-umis.cwl
STARR-seq pipeline - reads: PE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/STARR-seq_pipeline/pipeline-pe-umis.cwl Branch/Commit ID: master |
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analysis-workflow.cwl
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https://github.com/mskcc/pluto-cwl.git
Path: cwl/analysis-workflow.cwl Branch/Commit ID: master |
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exome alignment and somatic variant detection
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/pipelines/somatic_exome_nonhuman.cwl Branch/Commit ID: low-vaf |
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Varscan Workflow
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https://github.com/hamid58b/cancer-genomics-workflow.git
Path: varscan/workflow.cwl Branch/Commit ID: master |
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io-int-default-wf.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/io-int-default-wf.cwl Branch/Commit ID: master |
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sc_atac_seq_initial_analysis.cwl
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https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git
Path: sc-atac-seq-pipeline/steps/sc_atac_seq_initial_analysis.cwl Branch/Commit ID: c338cd3 |
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bgzip and index VCF
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https://github.com/acoffman/dockstore-test.git
Path: Dockstore.cwl Branch/Commit ID: master |
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per_cluster_workflow.cwl
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https://github.com/FarahZKhan/scalability-reproducibility-chapter.git
Path: CWL/per_cluster_workflow.cwl Branch/Commit ID: ProvCaptureDemo |
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annotator_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
https://github.com/svonworl/OxoG-Dockstore-Tools.git
Path: annotator_sub_wf.cwl Branch/Commit ID: master |
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zip_and_index_vcf.cwl
This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output. |
https://github.com/ICGC-TCGA-PanCancer/pcawg-oxog-filter.git
Path: zip_and_index_vcf.cwl Branch/Commit ID: master |
