Explore Workflows

This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json `

https://github.com/ICGC-TCGA-PanCancer/pcawg-snv-indel-annotation.git

Path: pcawg_annotate_wf.cwl

Branch/Commit ID: 1.0.0

https://github.com/EvolutionaryGenomics/scalability-reproducibility-chapter.git

Path: CWL/workflow.cwl

Branch/Commit ID: master

This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json `

https://github.com/icgc-tcga-pancancer/pcawg-minibam.git

Path: pcawg_minibam_wf.cwl

Branch/Commit ID: master

This workflow execute peak caller and QC from ChIP-exo for single-end samples using MACE

https://gitlab.com/r78v10a07/cwl-workflow.git

Path: workflows/ChIP-exo/peak-caller-MACE-SE.cwl

Branch/Commit ID: master

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/icgc-tcga-pancancer/pcawg-minibam.git

Path: preprocess_vcf.cwl

Branch/Commit ID: master

Alpha rarefaction plotting from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

https://github.com/bespin-workflows/16s-qiime2.git

Path: subworkflows/qiime2-07-alpha-rarefaction.cwl

Branch/Commit ID: develop

https://github.com/DimitraPanou/scRNAseq-cwl.git

Path: steps.cwl

Branch/Commit ID: master

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/count-lines9-wf.cwl

Branch/Commit ID: master

https://github.com/Alves-Bruno/hecil-cwl.git

Path: hecil.cwl

Branch/Commit ID: master

https://doi.org/10.1007/s12275-011-1213-z

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/rna-selector.cwl

Branch/Commit ID: c1f8b22