Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph find_hotspots_in_normals.cwl

Workflow to find hotspot VAFs from duplex (for Tumor sample) and unfiltered (for Normal sample) pileups. These inputs are all required to be sorted in the same order: sample_ids patient_ids sample_classes unfiltered_pileups duplex_pileups

https://github.com/mskcc/innovation-pipeline.git

Path: workflows/subworkflows/find_hotspots_in_normals.cwl

Branch/Commit ID: master
workflow graph ValidateParameterByDataComparision

Validation by comparing simulation parameter with calibration or laboratory data values. Might include statistical evaluation of differences, plotting, or expert review.

 https://github.com/gammasim/workflows.git

Path: workflows/ValidateParameterByDataComparision.cwl

Branch/Commit ID: main
workflow graph rest_parallel.cwl

https://github.com/CWL-FLOps/DecentralizedFL-CWL.git

Path: CWL_Workflow/rest_parallel.cwl

Branch/Commit ID: main
workflow graph cond-wf-012_nojs.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/conditionals/cond-wf-012_nojs.cwl

Branch/Commit ID: main
workflow graph bulk scRNA-seq pipeline using Salmon

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: bulk-pipeline.cwl

Branch/Commit ID: 9225fa2
workflow graph qiime2 create phylogenetic tree

Generate a tree for phylogenetic diversity analyses from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-dada2.cwl

Branch/Commit ID: qiime2-workflow

Packed ID: qiime2-05-phylogeny.cwl
workflow graph Per-region pindel

https://github.com/litd/analysis-workflows.git

Path: definitions/subworkflows/pindel_cat.cwl

Branch/Commit ID: master
workflow graph gvcf-distr.cwl

https://github.com/Sentieon/Sentieon-cwl.git

Path: stage/gvcf-distr.cwl

Branch/Commit ID: master
workflow graph 04-quantification.cwl

STARR-seq 04 quantification

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/STARR-seq_pipeline/04-quantification.cwl

Branch/Commit ID: master
workflow graph count-lines18-wf.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/count-lines18-wf.cwl

Branch/Commit ID: 1f3ef888d9ef2306c828065c460c1800604f0de4