Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph count-lines11-null-step-wf-noET.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/count-lines11-null-step-wf-noET.cwl

Branch/Commit ID: master
workflow graph main-somatic-giab-mix.cwl

https://github.com/bcbio/bcbio_validation_workflows.git

Path: somatic-giab-mix/somatic-giab-mix-workflow/main-somatic-giab-mix.cwl

Branch/Commit ID: master
workflow graph collate_unique_SSU_headers.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/collate_unique_SSU_headers.cwl

Branch/Commit ID: f914942
workflow graph WGS and MT analysis for fastq files

rna / protein - qc, preprocess, filter, annotation, index, abundance

 https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/wgs-fastq.workflow.cwl

Branch/Commit ID: master
workflow graph ACCESS_pipeline.cwl

https://github.com/mskcc/ACCESS-Pipeline.git

Path: workflows/ACCESS_pipeline.cwl

Branch/Commit ID: master
workflow graph exome alignment and variant detection

https://github.com/genome/cancer-genomics-workflow.git

Path: exome_workflow.cwl

Branch/Commit ID: toil_compatibility
workflow graph BAM to BEDPE

Comvert BAM to BEDPE and compress the output

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/File-formats/bamtobedpe-gzip.cwl

Branch/Commit ID: master
workflow graph abundance

abundace profiles from annotated files, for protein and/or rna

 https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/abundance.workflow.cwl

Branch/Commit ID: master
workflow graph Add snv and indel bam-readcount files to a vcf

https://github.com/ChrisMaherLab/PACT.git

Path: subworkflows/vcf_readcount_annotator.cwl

Branch/Commit ID: master
workflow graph SetGeomagneticField

Calculate geomagnetic field parameters for a given site and date.

 https://github.com/gammasim/workflows.git

Path: workflows/SetGeomagneticField.cwl

Branch/Commit ID: main