Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph wf_get_peaks_chimeric_se.cwl

https://github.com/YeoLab/eclip.git

Path: cwl/wf_get_peaks_chimeric_se.cwl

Branch/Commit ID: master
workflow graph wf52.cwl

https://github.com/NCATS-Tangerine/ros.git

Path: ros/wf5/wf52.cwl

Branch/Commit ID: master
workflow graph downsample unaligned BAM and align

https://github.com/genome/cancer-genomics-workflow.git

Path: unaligned_bam_to_bqsr/downsample_workflow.cwl

Branch/Commit ID: toil_compatibility
workflow graph htseq_count_workflow.cwl

https://github.com/NCI-GDC/htseq-cwl.git

Path: workflows/htseq_count_workflow.cwl

Branch/Commit ID: master
workflow graph count-lines12-wf.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/count-lines12-wf.cwl

Branch/Commit ID: main
workflow graph dynresreq-workflow-stepdefault.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/dynresreq-workflow-stepdefault.cwl

Branch/Commit ID: 50251ef931d108c09bed2d330d3d4fe9c562b1c3
workflow graph rRNA_selection.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/rRNA_selection.cwl

Branch/Commit ID: f6b5196
workflow graph SoupX (workflow) - an R package for the estimation and removal of cell free mRNA contamination

Wrapped in a workflow SoupX tool for easy access to Cell Ranger pipeline compressed outputs.

https://github.com/mr-c/datirium-workflows.git

Path: tools/soupx-subworkflow.cwl

Branch/Commit ID: license_test
workflow graph etl_http.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/dnaseq/etl_http.cwl

Branch/Commit ID: 469bbb5e318146b3096f307f5d8e9f72cbd6bc06
workflow graph trim-rnaseq-se.cwl

Runs RNA-Seq BioWardrobe basic analysis with single-end data file.

https://github.com/Barski-lab/workflows.git

Path: workflows/trim-rnaseq-se.cwl

Branch/Commit ID: 812b0ff40dda18ab7a9a872ff13a577be8531ba6