Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	search.cwl#main	https://github.com/common-workflow-language/cwl-v1.2.git Path: tests/search.cwl Branch/Commit ID: c7c97715b400ff2194aa29fc211d3401cea3a9bf Packed ID: main
	Cellranger reanalyze - reruns secondary analysis performed on the feature-barcode matrix Devel version of Single-Cell Cell Ranger Reanalyze ================================================== Workflow calls \"cellranger aggr\" command to rerun secondary analysis performed on the feature-barcode matrix (dimensionality reduction, clustering and visualization) using different parameter settings. As an input we use filtered feature-barcode matrices in HDF5 format from cellranger count or aggr experiments. Note, we don't pass aggregation_metadata from the upstream cellranger aggr step. Need to address this issue when needed.	https://github.com/datirium/workflows.git Path: workflows/cellranger-reanalyze.cwl Branch/Commit ID: 7ced5a5259dbd8b3fc64456beaeffd44f4a24081
	Calibration inputs to Simulation Model This workflow produces calibration inputs to simulation model: - atmospheric model - extinction hypercube - telescopes' cameras configurations - telescopes' PSFs - optical throughput	https://gitlab.cta-observatory.org/cta-computing/dpps/dpps-workflows.git Path: workflows/calibpipe/uc-cp-001.cwl Branch/Commit ID: eb6a98289850791cd1891c89e5209180c35c7858
	align_sort_sa	https://github.com/ncbi/pgap.git Path: task_types/tt_align_sort_sa.cwl Branch/Commit ID: 1e7aa9f0c34987ddafa35f9b1d2c77d99fafbdab
	Production Configuration This workflow prepares the configuration of the subsequent production steps.	https://gitlab.cta-observatory.org/cta-computing/dpps/dpps-workflows.git Path: workflows/wms/uc-wms-XXX.cwl Branch/Commit ID: eb6a98289850791cd1891c89e5209180c35c7858
	chipseq-gen-bigwig.cwl	https://github.com/datirium/workflows.git Path: subworkflows/chipseq-gen-bigwig.cwl Branch/Commit ID: 0ddfca10c41f83bb120c7633e0db9dba7441bca0
	directory.cwl Inspect provided directory and return filenames. Generate a new directory and return it (including content).	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/directory.cwl Branch/Commit ID: 8ef515037de411abd2f84b569ad4d4a4f7a2c7a0
	bam-bedgraph-bigwig.cwl Workflow converts input BAM file into bigWig and bedGraph files. Input BAM file should be sorted by coordinates (required by `bam_to_bedgraph` step). If `split` input is not provided use true by default. Default logic is implemented in `valueFrom` field of `split` input inside `bam_to_bedgraph` step to avoid possible bug in cwltool with setting default values for workflow inputs. `scale` has higher priority over the `mapped_reads_number`. The last one is used to calculate `-scale` parameter for `bedtools genomecov` (step `bam_to_bedgraph`) only in a case when input `scale` is not provided. All logic is implemented inside `bedtools-genomecov.cwl`. `bigwig_filename` defines the output name only for generated bigWig file. `bedgraph_filename` defines the output name for generated bedGraph file and can influence on generated bigWig filename in case when `bigwig_filename` is not provided. All workflow inputs and outputs don't have `format` field to avoid format incompatibility errors when workflow is used as subworkflow.	https://github.com/datirium/workflows.git Path: tools/bam-bedgraph-bigwig.cwl Branch/Commit ID: c5bae2ca862c764911b83d1f15ff6af4e2a0db28
	Exome QC workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/qc_exome_no_verify_bam.cwl Branch/Commit ID: 049f4aeff4c4a1b8421cac9b1c1c1f0da5848315
	tt_blastn_wnode	https://github.com/ncbi/pgap.git Path: task_types/tt_blastn_wnode.cwl Branch/Commit ID: 72c3091012f5c2dce38ad9213cda617d2c7a61ac