Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph exome alignment and germline variant detection

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/subworkflows/germline_detect_variants.cwl

Branch/Commit ID: No_filters_detect_variants
workflow graph revsort.cwl

Reverse the lines in a document, then sort those lines.

 https://github.com/theferrit32/toil.git

Path: src/toil/test/cwl/revsort.cwl

Branch/Commit ID: master
workflow graph protein_evidence_mapping.cwl

https://github.com/pvanheus/lukasa.git

Path: protein_evidence_mapping.cwl

Branch/Commit ID: master
workflow graph Produce a list of residue-mapped structural domain instances from Pfam ids

Retrieve and process the PDB structures corresponding to the Pfam family ids resulting in a list of residue-mapped structural domain instances along with lost structural instances (requires Data/pdbmap downloaded from Pfam and uses SIFTS resource for UniProt to PDB residue Mapping)

https://gitlab.inria.fr/capsid.public_codes/CroMaSt.git

Path: Tools/resmapping_pfam_instances_subwf.cwl

Branch/Commit ID: main
workflow graph pcawg_minibam_wf.cwl

This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json `

https://github.com/ICGC-TCGA-PanCancer/pcawg-minibam.git

Path: pcawg_minibam_wf.cwl

Branch/Commit ID: 1.0.0
workflow graph Detect Variants workflow

https://github.com/litd/analysis-workflows.git

Path: definitions/pipelines/detect_variants.cwl

Branch/Commit ID: master
workflow graph rMATS_bam_packed.cwl

https://github.com/Xinglab/rmats-turbo.git

Path: cwl/rMATS_bam_packed.cwl

Branch/Commit ID: master
workflow graph module-4

https://github.com/mskcc/roslin-variant.git

Path: setup/cwl/module-4.cwl

Branch/Commit ID: dev
workflow graph gdc_dnaseq_main_workflow.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: subworkflows/main/gdc_dnaseq_main_workflow.cwl

Branch/Commit ID: master
workflow graph sc_atac_seq_initial_analysis.cwl

https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git

Path: sc-atac-seq-pipeline/steps/sc_atac_seq_initial_analysis.cwl

Branch/Commit ID: c338cd3