Explore Workflows

https://github.com/fjrmoreews/cwl-workflow-SARS-CoV-2.git

Path: PreProcessing/batch-preprocess-ont.cwl

Branch/Commit ID: master

This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json `

https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git

Path: oxog_varbam_annotate_wf.cwl

Branch/Commit ID: master

https://github.com/alaninmcr/test-cwl.git

Path: workflows/rp2-to-rp2path.cwl

Branch/Commit ID: 98d5e21affae77ec12ecf300

PGAP pipeline for external usage, powered via containers, simple user input: (FASTA + yaml only, no template)

https://github.com/ncbi/pgap.git

Path: pgap.cwl

Branch/Commit ID: 89839cdb0a3216024f5f97af5581ae9753de0496

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/count-lines8-wf.cwl

Branch/Commit ID: master

https://github.com/h3abionet/h3agatk.git

Path: workflows/GATK/GATK-Sub-Workflow-h3abionet-indel-no-vqsr.cwl

Branch/Commit ID: 1.0.1

https://github.com/genome/cancer-genomics-workflow.git

Path: unaligned_bam_to_bqsr/align.cwl

Branch/Commit ID: toil_compatibility

https://github.com/d3b-center/canine-dev.git

Path: subworkflows/canine_vcfmerger2_module.cwl

Branch/Commit ID: master

https://github.com/ashviyer/PSVD-transcriptomics-workflow.git

Path: workflow/workflow.cwl

Branch/Commit ID: main

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/immuno.cwl

Branch/Commit ID: 60edaf6f57eaaf02cda1a3d8cb9a825aa64a43e2