Explore Workflows
View already parsed workflows here or click here to add your own
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exome alignment and somatic variant detection
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Path: definitions/pipelines/somatic_exome_mouse.cwl Branch/Commit ID: downsample_and_recall |
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somatic_exome: exome alignment and somatic variant detection
somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml |
Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: downsample_and_recall |
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ACCESS_pipeline.cwl
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Path: workflows/ACCESS_pipeline.cwl Branch/Commit ID: master |
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sc_atac_seq_initial_analysis.cwl
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Path: sc-atac-seq-pipeline/steps/sc_atac_seq_initial_analysis.cwl Branch/Commit ID: 14985c9 |
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sc_atac_seq_initial_analysis.cwl
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Path: sc-atac-seq-pipeline/steps/sc_atac_seq_initial_analysis.cwl Branch/Commit ID: c338cd3 |
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EMG pipeline v3.0 (single end version)
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Path: workflows/emg-pipeline-v3.cwl Branch/Commit ID: a8abd0e |
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functional analysis prediction with InterProScan
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Path: workflows/functional_analysis.cwl Branch/Commit ID: 56dafa4 |
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functional analysis prediction with InterProScan
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Path: workflows/functional_analysis.cwl Branch/Commit ID: 9c57dba |
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rRNA_selection.cwl
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Path: tools/rRNA_selection.cwl Branch/Commit ID: 71d9c83 |
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TransDecoder 2 step workflow, running TransDecoder.LongOrfs (step 1) followed by TransDecoder.Predict (step2)
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Path: workflows/TransDecoder-v5-wf-2steps.cwl Branch/Commit ID: master |
