Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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revsort-single-no-docker.cwl
Reverse the lines in a document, then sort those lines. |
https://github.com/Duke-GCB/calrissian.git
Path: input-data/revsort-single-no-docker.cwl Branch/Commit ID: master |
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secret_wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/secret_wf.cwl Branch/Commit ID: main |
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preparation_workflow.cwl
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https://github.com/NCI-GDC/gatk4_mutect2_cwl.git
Path: utils-cwl/subworkflow/preparation_workflow.cwl Branch/Commit ID: master |
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assemble.cwl
Assemble a set of reads using SKESA |
https://github.com/ncbi/pgap.git
Path: assemble.cwl Branch/Commit ID: test |
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gcaccess_from_list
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https://github.com/ncbi/pgap.git
Path: task_types/tt_gcaccess_from_list.cwl Branch/Commit ID: test |
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count-lines14-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/count-lines14-wf.cwl Branch/Commit ID: main |
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hello_world.cwl
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https://github.com/dockstore/hello_world.git
Path: hello_world.cwl Branch/Commit ID: 1.0.1 |
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NonSpliced RNAseq workflow
Workflow for NonSpliced RNAseq data alignment with multiple aligners. Steps: - workflow_illumina_quality.cwl: - FastQC (control) - fastp (trimming) - bowtie2 (read mapping) - sam_to_sorted-bam - featurecounts (transcript read counts) - kallisto (transcript [pseudo]counts) |
https://git.wur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_RNAseq_NonSpliced.cwl Branch/Commit ID: master |
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count-lines4-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/count-lines4-wf.cwl Branch/Commit ID: master |
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assemble.cwl
Assemble a set of reads using SKESA |
https://github.com/ncbi/pgap.git
Path: assemble.cwl Branch/Commit ID: 61eaea2f746c8a1fc2a2b731056b068e28ca4e20 |
