Explore Workflows

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/rRNA_selection.cwl

Branch/Commit ID: 930a2cf

https://github.com/common-workflow-library/legacy.git

Path: workflows/compile/compile1.cwl

Branch/Commit ID: master

Packed ID: main

https://github.com/farahzkhan/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v4-paired.cwl

Branch/Commit ID: master

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/variant_calling/post_freebayes.cwl

Branch/Commit ID: master

Calculates the rescue ratio (see Gabe's protocols paper), given two eCLIP IP samples and 2 size-matched input samples. Also returns the reproducible peaks given these two samples. This is different from the 1input workflow in that each INPUT is first merged together and is used downstream instead of the 1input version, which remains unmodified. Merged inputs are NOT used in calculating true reproducible peaks.

https://github.com/YeoLab/merge_peaks.git

Path: cwl/wf_rescue_ratio_1input.cwl

Branch/Commit ID: master

https://github.com/cr-ste-justine/chujs-alignment-workflow.git

Path: workflows/wesp2.cwl

Branch/Commit ID: dev

https://github.com/pitagora-network/DAT2-cwl.git

Path: workflow/transcriptome-assembly/transcriptome-assembly.cwl

Branch/Commit ID: main

This workflow is intended to be used to test the QC module, without having to run the long waltz step

https://github.com/mskcc/ACCESS-Pipeline.git

Path: workflows/QC/qc_workflow_wo_waltz.cwl

Branch/Commit ID: master

This workflow takes in appropriate trimming params and demultiplexed reads, and performs the following steps in order: trimx1, trimx2, fastq-sort, filter repeat elements, fastq-sort, genomic mapping, sort alignment, index alignment, namesort, PCR dedup, sort alignment, index alignment

https://github.com/YeoLab/eclip.git

Path: cwl/wf_trim_and_map_pe.cwl

Branch/Commit ID: master

https://github.com/DimitraPanou/scRNAseq-cwl.git

Path: subworkflows/steps.cwl

Branch/Commit ID: b8e641c