Explore Workflows
View already parsed workflows here or click here to add your own
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CNV_pipeline
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Path: structuralvariants/cwl/workflow.cwl Branch/Commit ID: 1.0.9 |
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WF5201.cwl
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Path: WF5201.cwl Branch/Commit ID: main |
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HS Metrics workflow
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Path: definitions/subworkflows/hs_metrics.cwl Branch/Commit ID: downsample_and_recall |
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chksum_xam_to_interleaved_fq.cwl
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Path: cwls/chksum_xam_to_interleaved_fq.cwl Branch/Commit ID: 0.5.0 |
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sum-wf.cwl
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Path: v1.0/v1.0/sum-wf.cwl Branch/Commit ID: master |
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bam to trimmed fastqs and HISAT alignments
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Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: No_filters_detect_variants |
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combine_counts.cwl
Combines read counts (generated by the 01_mpileups workflow) from multiple files into one file. |
Path: 02_combine_counts/combine_counts.cwl Branch/Commit ID: main |
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preprocess_vcf.cwl
This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow. |
Path: preprocess_vcf.cwl Branch/Commit ID: 1.0.0 |
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Subworkflow to allow calling different SV callers which require bam files as inputs
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Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: downsample_and_recall |
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qiime2 create phylogenetic tree
Generate a tree for phylogenetic diversity analyses from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
Path: subworkflows/qiime2-05-phylogeny.cwl Branch/Commit ID: develop |
