Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph CNV_pipeline

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/workflow.cwl

Branch/Commit ID: 1.0.9
workflow graph WF5201.cwl

https://github.com/Marco-Salvi/cwl-ro-crate.git

Path: WF5201.cwl

Branch/Commit ID: main
workflow graph HS Metrics workflow

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/hs_metrics.cwl

Branch/Commit ID: downsample_and_recall
workflow graph chksum_xam_to_interleaved_fq.cwl

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/chksum_xam_to_interleaved_fq.cwl

Branch/Commit ID: 0.5.0
workflow graph sum-wf.cwl

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/sum-wf.cwl

Branch/Commit ID: master
workflow graph bam to trimmed fastqs and HISAT alignments

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl

Branch/Commit ID: No_filters_detect_variants
workflow graph combine_counts.cwl

Combines read counts (generated by the 01_mpileups workflow) from multiple files into one file.

https://github.com/reddylab/bird-workflow.git

Path: 02_combine_counts/combine_counts.cwl

Branch/Commit ID: main
workflow graph preprocess_vcf.cwl

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/ICGC-TCGA-PanCancer/pcawg-minibam.git

Path: preprocess_vcf.cwl

Branch/Commit ID: 1.0.0
workflow graph Subworkflow to allow calling different SV callers which require bam files as inputs

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/single_sample_sv_callers.cwl

Branch/Commit ID: downsample_and_recall
workflow graph qiime2 create phylogenetic tree

Generate a tree for phylogenetic diversity analyses from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/bespin-workflows/16s-qiime2.git

Path: subworkflows/qiime2-05-phylogeny.cwl

Branch/Commit ID: develop