Explore Workflows
View already parsed workflows here or click here to add your own
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qc_workflow_wo_waltz.cwl
This workflow is intended to be used to test the QC module, without having to run the long waltz step |
https://github.com/andurill/ACCESS-Pipeline.git
Path: workflows/QC/qc_workflow_wo_waltz.cwl Branch/Commit ID: 0.0.33_dmp |
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standard_bam_to_collapsed_qc.cwl
This is a workflow to go from standard bams to collapsed bams and QC results. |
https://github.com/andurill/ACCESS-Pipeline.git
Path: workflows/subworkflows/standard_bam_to_collapsed_qc.cwl Branch/Commit ID: master |
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Calculate FDA-requested metrics on all aligned and unaligned sequence files
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/generate_fda_metrics.cwl Branch/Commit ID: master |
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mutect2_calling.cwl
GATK4.1.2 Mutect2 workflow |
https://github.com/NCI-GDC/gatk4_mutect2_cwl.git
Path: subworkflows/mutect2_calling.cwl Branch/Commit ID: master |
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qiime2 diversity analyses
Alpha and beta diversity analysis from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step3-alpha-analysis.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: qiime2-06-alpha-beta-diversity.cwl |
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mutect parallel workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/mutect.cwl Branch/Commit ID: master |
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birds.cwl
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https://github.com/EOSC-LOFAR/presto-cwl.git
Path: birds.cwl Branch/Commit ID: visualise |
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count-lines5-wf.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/count-lines5-wf.cwl Branch/Commit ID: master |
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final_filtering
Final filtering |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/final_filtering.cwl Branch/Commit ID: 1.1.3 |
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gatk-4.0.0.0-genomics-db-and-genotypegvcfs-per-interval.cwl
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https://github.com/wtsi-hgi/arvados-pipelines.git
Path: cwl/workflows/gatk-4.0.0.0-genomics-db-and-genotypegvcfs-per-interval.cwl Branch/Commit ID: master |
