Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Add snv and indel bam-readcount files to a vcf
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https://github.com/ChrisMaherLab/PACT.git
Path: subworkflows/vcf_readcount_annotator.cwl Branch/Commit ID: master |
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count-lines11-extra-step-wf.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/count-lines11-extra-step-wf.cwl Branch/Commit ID: master |
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align-dir-pack.cwl#main
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https://github.com/KBNLresearch/ochre.git
Path: ochre/cwl/align-dir-pack.cwl Branch/Commit ID: master Packed ID: main |
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bam_filtering
BAM filtering |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/abstract_operations/subworkflows/bam_filtering.cwl Branch/Commit ID: master |
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Seed Protein Alignments
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_seed_seqids.cwl Branch/Commit ID: dev |
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analysis for assembled sequences
rna / protein - qc, annotation, index, abundance |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/assembled.workflow.cwl Branch/Commit ID: master |
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scatter-workflow.cwl
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https://github.com/common-workflow-language/user_guide.git
Path: src/_includes/cwl/workflows/scatter-workflow.cwl Branch/Commit ID: main |
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qiime2 importing data
Obtaining and importing data from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step1-import-demux-paired.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: qiime2-01-import-data-paired.cwl |
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oxog_sub_wf.cwl
This is a subworkflow - this is not meant to be run as a stand-alone workflow! |
https://github.com/ICGC-TCGA-PanCancer/pcawg-oxog-filter.git
Path: oxog_sub_wf.cwl Branch/Commit ID: develop |
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concatenate-flag.cwl
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https://git.astron.nl/RD/VLBI-cwl.git
Path: workflows/concatenate-flag.cwl Branch/Commit ID: master |
