Explore Workflows

https://github.com/briandoconnor/dockstore-workflow-md5sum.git

Path: md5sum.cwl

Branch/Commit ID: 1.4.0

https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git

Path: steps/sc_atac_seq_initial_analysis.cwl

Branch/Commit ID: 3da5dd0

https://github.com/agonopol/tara-ocean-analysis.git

Path: scattered-protein-search.cwl

Branch/Commit ID: master

This workflow takes in single-end reads, and performs the following steps in order: demux_se.cwl (does not actually demux for single end, but mirrors the paired-end processing protocol)

https://github.com/yeolab/eclip.git

Path: cwl/wf_demultiplex_se.cwl

Branch/Commit ID: master

Serial combination of KnowEnG tools

https://github.com/KnowEnG-Research/cwl-specification.git

Path: code/workflow.sc.cwl

Branch/Commit ID: master

https://github.com/common-workflow-language/user_guide.git

Path: src/_includes/cwl/workflows/1st-workflow.cwl

Branch/Commit ID: main

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3.cwl

Branch/Commit ID: 0746e12

This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output.

https://github.com/ICGC-TCGA-PanCancer/pcawg-snv-indel-annotation.git

Path: zip_and_index_vcf.cwl

Branch/Commit ID: develop

https://github.com/johnbradley/iMADS-worker.git

Path: predict_service/preference-workflow.cwl

Branch/Commit ID: master

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/SSU-from-tablehits.cwl

Branch/Commit ID: 8e196ab