Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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Build Bismark indices
Copy fasta_file file to the folder and run run bismark_genome_preparation script to prepare indices for Bismark Methylation Analysis. Bowtie2 aligner is used by default. The name of the output indices folder is equal to the genome input. |
https://github.com/datirium/workflows.git
Path: workflows/bismark-index.cwl Branch/Commit ID: d1bef74924efcb8bfaa00987b3f148d5a192b7a9 |
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foreign_screening.cwl
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https://github.com/ncbi/pgap.git
Path: vecscreen/foreign_screening.cwl Branch/Commit ID: 2229f26ec424f9ebeb3db7fec3bd3f84a38c7485 |
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Example of setting up a simulation system
Common Workflow Language example that illustrate the process of setting up a simulation system containing a protein, step by step, using the BioExcel Building Blocks library (biobb). The particular example used is the Lysozyme protein (PDB code 1AKI). |
https://github.com/stain/biobb_example_workflow.git
Path: protein_md.cwl Branch/Commit ID: 1cf3dc0b25804a648757cd20c45f49c62e095af1 |
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import_schema-def.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/import_schema-def.cwl Branch/Commit ID: fe164457f370c2dfec5156f6d6d45818d53cb871 |
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Run tRNAScan
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https://github.com/ncbi/pgap.git
Path: bacterial_trna/wf_trnascan.cwl Branch/Commit ID: 2229f26ec424f9ebeb3db7fec3bd3f84a38c7485 |
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chksum_seqval_wf_interleaved_fq.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/chksum_seqval_wf_interleaved_fq.cwl Branch/Commit ID: 876a05979fb34a8b68c51618a001149daba0562b |
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kb-tss-preprocess-all.cwl#main
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https://github.com/KBNLresearch/ochre.git
Path: ochre/cwl/kb-tss-preprocess-all.cwl Branch/Commit ID: a62bf3b31df83784c017d30a83ed8e01d454bf1c Packed ID: main |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-single.cwl Branch/Commit ID: 25129f55226dee595ef941edc24d3c44414e0523 |
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trnascan_wnode and gpx_qdump combined
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https://github.com/ncbi/pgap.git
Path: bacterial_trna/wf_scan_and_dump.cwl Branch/Commit ID: 42712bca4c3307d87b6b55f525a4c97cb6f7e288 |
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lobSTR-workflow.cwl
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https://github.com/common-workflow-language/cwlviewer.git
Path: src/test/resources/cwl/lobstr-v1/lobSTR-workflow.cwl Branch/Commit ID: 656bf44950370c64e8e55b09d86737036e85e283 |