Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Non-Coding Bacterial Genes	https://github.com/ncbi/pgap.git Path: bacterial_noncoding/wf_bacterial_noncoding.cwl Branch/Commit ID: 8ea3637b0f11eac1ea5599c41d74e00d85fb778d
	Create Genomic Collection for Bacterial Pipeline, ASN.1 input	https://github.com/ncbi/pgap.git Path: genomic_source/wf_genomic_source_asn.cwl Branch/Commit ID: 8ea3637b0f11eac1ea5599c41d74e00d85fb778d
	scatter-wf3_v1_0.cwl#main	https://github.com/common-workflow-language/cwl-utils.git Path: testdata/scatter-wf3_v1_0.cwl Branch/Commit ID: 124a08ce3389eb49066c34a4163cbbed210a0355 Packed ID: main
	Produce a list of residue-mapped structural domain instances from Pfam ids Retrieve and process the PDB structures corresponding to the Pfam family ids resulting in a list of residue-mapped structural domain instances along with lost structural instances (requires Data/pdbmap downloaded from Pfam and uses SIFTS resource for UniProt to PDB residue Mapping)	https://github.com/HrishiDhondge/CroMaSt.git Path: Tools/resmapping_pfam_instances_subwf.cwl Branch/Commit ID: a030726eafe217f8fea39bbdd05321d10b61a229
	count-lines7-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/count-lines7-wf.cwl Branch/Commit ID: e9c83739a93fa0b18f8dea2f98b632a9e32725c9
	wgs alignment and tumor-only variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/tumor_only_wgs.cwl Branch/Commit ID: 1750cd5cc653f058f521b6195e3bec1e7df1a086
	Apply filters to VCF file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/filter_vcf.cwl Branch/Commit ID: ec45fad68ca10fb64d5c58e704991b146dc31d28
	tt_fscr_calls_pass1	https://github.com/ncbi/pgap.git Path: task_types/tt_fscr_calls_pass1.cwl Branch/Commit ID: f5c11df465aaadf712c38ba4933679fe1cbe03ca
	varscan somatic workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: 3ee63d8757c341ca98b3b46ec4782862ad19b710
	protein_extract	https://github.com/ncbi/pgap.git Path: progs/protein_extract.cwl Branch/Commit ID: 8ea3637b0f11eac1ea5599c41d74e00d85fb778d