Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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EMG assembly for paired end Illumina
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https://github.com/farahzkhan/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v4-assembly-metaSPAdes.cwl Branch/Commit ID: master |
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wgs alignment and tumor-only variant detection
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https://github.com/fgomez02/analysis-workflows.git
Path: definitions/pipelines/wgs.cwl Branch/Commit ID: No_filters_detect_variants |
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Genome conversion and annotation
Workflow for genome annotation from EMBL format |
https://git.wur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_sapp_microbes.cwl Branch/Commit ID: master |
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chksum_for_corrupted_fastq_files.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/chksum_for_corrupted_fastq_files.cwl Branch/Commit ID: 0.5.0 |
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Hello World
Puts a message into a file using echo |
https://github.com/markrobbo/workflows.git
Path: workflows/hello/hello-param.cwl Branch/Commit ID: master Packed ID: main |
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module-6
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https://github.com/mskcc/roslin-variant.git
Path: setup/cwl/module-6.cwl Branch/Commit ID: dev |
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wf_fastqc.cwl
This workflow takes in single-end reads, and performs the following steps in order: demux_se.cwl (does not actually demux for single end, but mirrors the paired-end processing protocol) |
https://github.com/yeolab/eclip.git
Path: cwl/wf_fastqc.cwl Branch/Commit ID: master |
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Subsample BAM file creating a tagAlign and pseudoreplicates
This workflow creates a subsample from a BAM file creating a tagAlign and pseudoreplicates |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/File-formats/subample-pseudoreplicates.cwl Branch/Commit ID: master |
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final-workflow.cwl
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https://github.com/nal-i5k/organism_onboarding.git
Path: final-workflow.cwl Branch/Commit ID: master |
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GATK-v1.0-Workflow.cwl
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https://github.com/Johnnywang92/GATK-CWL-WorkFlow-201903.git
Path: GATK-v1.0-Workflow.cwl Branch/Commit ID: master |
