Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Salmon quantification, FASTQ -> H5AD count matrix	https://github.com/hubmapconsortium/salmon-rnaseq.git Path: steps/salmon-quantification.cwl Branch/Commit ID: 0e042776c8446115e70144fae5497465a5ff1e7e
	harmonization_bwa_mem_no_trim.cwl	https://github.com/uc-cdis/genomel_pipelines.git Path: genomel/cwl/workflows/harmonization/harmonization_bwa_mem_no_trim.cwl Branch/Commit ID: c84973e6e96d5232152a87bdd40ee8f5bab470c0
	alignment_novoalign.cwl	https://github.com/uc-cdis/genomel_pipelines.git Path: genomel/cwl/workflows/harmonization/alignment_novoalign.cwl Branch/Commit ID: c84973e6e96d5232152a87bdd40ee8f5bab470c0
	conflict.cwl#main	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/conflict.cwl Branch/Commit ID: 07ebbea2bdf97955060c1dd563580b386388519b Packed ID: main
	allele-rnaseq-pe.cwl	https://github.com/Barski-lab/workflows.git Path: workflows/allele-rnaseq-pe.cwl Branch/Commit ID: b25b17651171f32005e9d879a9a049382f044baf
	chipseq-se.cwl Runs ChIP-Seq BioWardrobe basic analysis with single-end data file.	https://github.com/Barski-lab/workflows.git Path: workflows/chipseq-se.cwl Branch/Commit ID: b25b17651171f32005e9d879a9a049382f044baf
	blastp_wnode_struct	https://github.com/ncbi/pgap.git Path: task_types/tt_blastp_wnode_struct.cwl Branch/Commit ID: 68311dd5328bf6b782a370a0253b41062a3359a3
	Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_ab_initio_training.cwl Branch/Commit ID: 68311dd5328bf6b782a370a0253b41062a3359a3
	Prepare user input Prepare user input for NCBI-PGAP pipeline	https://github.com/ncbi/pgap.git Path: prepare_user_input2.cwl Branch/Commit ID: 2a81fcde75ca7665814c8de2210c7bc3121a08a3
	gp_makeblastdb	https://github.com/ncbi/pgap.git Path: progs/gp_makeblastdb.cwl Branch/Commit ID: 609aead9804a8f31fa9b3dbc7e52105aec487f31