Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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scatter-wf4.cwl#main
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/scatter-wf4.cwl Branch/Commit ID: 7dec97bb8f0bc2d9e9eb710faf41f2e98cc7cdda Packed ID: main |
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pass-unconnected.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/pass-unconnected.cwl Branch/Commit ID: 148f11b11d31c098196e649f680797f0b4680114 |
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count-lines2-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines2-wf.cwl Branch/Commit ID: d7cd45f7072960d264962ecc5a04d7c219f65c06 |
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no-inputs-wf.cwl
Workflow without inputs. |
https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/no-inputs-wf.cwl Branch/Commit ID: 40fcfc01812046f012acf5153cc955ee848e69e3 |
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Bacterial Annotation, pass 4, blastp-based functional annotation (second pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass4.cwl Branch/Commit ID: 42712bca4c3307d87b6b55f525a4c97cb6f7e288 |
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scatter-wf3.cwl#main
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/scatter-wf3.cwl Branch/Commit ID: d7cd45f7072960d264962ecc5a04d7c219f65c06 Packed ID: main |
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bam-bedgraph-bigwig.cwl
Workflow converts input BAM file into bigWig and bedGraph files. Input BAM file should be sorted by coordinates (required by `bam_to_bedgraph` step). If `split` input is not provided use true by default. Default logic is implemented in `valueFrom` field of `split` input inside `bam_to_bedgraph` step to avoid possible bug in cwltool with setting default values for workflow inputs. `scale` has higher priority over the `mapped_reads_number`. The last one is used to calculate `-scale` parameter for `bedtools genomecov` (step `bam_to_bedgraph`) only in a case when input `scale` is not provided. All logic is implemented inside `bedtools-genomecov.cwl`. `bigwig_filename` defines the output name only for generated bigWig file. `bedgraph_filename` defines the output name for generated bedGraph file and can influence on generated bigWig filename in case when `bigwig_filename` is not provided. All workflow inputs and outputs don't have `format` field to avoid format incompatibility errors when workflow is used as subworkflow. |
https://github.com/datirium/workflows.git
Path: tools/bam-bedgraph-bigwig.cwl Branch/Commit ID: b957a4f681bf0ca8ebba4e0d0ec3936bf79620c5 |
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count-lines10-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines10-wf.cwl Branch/Commit ID: d7cd45f7072960d264962ecc5a04d7c219f65c06 |
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count-lines6-wf.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/count-lines6-wf.cwl Branch/Commit ID: 148f11b11d31c098196e649f680797f0b4680114 |
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scatter-wf1.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/scatter-wf1.cwl Branch/Commit ID: 814bd0405a7701efc7d63e8f0179df394c7766f7 |
