Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	alignment for mouse with qc	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/alignment_wgs_mouse.cwl Branch/Commit ID: 049f4aeff4c4a1b8421cac9b1c1c1f0da5848315
	pindel parallel workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pindel.cwl Branch/Commit ID: a28a8077a8c4dbf117d16799807483a2532af3f3
	animal-genome-assembly.with_canu.cwl Animal Genome Assembly pipeline by Kazuharu Arakawa (@gaou_ak), CWLized by Tazro Ohta (@inutano). This workflow contains assembly step by canu which may take a few weeks to complete. Be careful to run!	https://github.com/pitagora-network/DAT2-cwl.git Path: workflow/animal-genome-assembly/animal-genome-assembly.with_canu.cwl Branch/Commit ID: 0cd20e1be620ae0817a1aa4286d73b78c89809f0
	pipeline-se.cwl ATAC-seq pipeline - reads: SE	https://github.com/Duke-GCB/GGR-cwl.git Path: v1.0/ATAC-seq_pipeline/pipeline-se.cwl Branch/Commit ID: 46e5078373d4668019485d27c71770aec9dd9f0e
	Optimize cuts and Generate IRF Optimize event selection and compute an IRF using the results.	https://gitlab.cta-observatory.org/cta-computing/dpps/datapipe/datapipe.git Path: workflows/workflow_optimize_and_irf.cwl Branch/Commit ID: 1667a96a2fe63d347cfe91d7d28d80898078ce86
	exome alignment and somatic variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: e509210450e4c62aecb99a228fc97f0eae2d9580
	gcaccess_from_list	https://github.com/ncbi/pgap.git Path: task_types/tt_gcaccess_from_list.cwl Branch/Commit ID: 861d9baa067af98d794ba0ed4e43aa42e37d8a24
	ani_top_n	https://github.com/ncbi/pgap.git Path: task_types/tt_ani_top_n.cwl Branch/Commit ID: 933a0b7554e4ae76a86d25c76b408b5dfc8ed1e3
	workflow_input_sf_expr.cwl	https://github.com/common-workflow-language/cwl-utils.git Path: testdata/workflow_input_sf_expr.cwl Branch/Commit ID: 4a8390d897913c3776a0d2b2a01e1e6134b968bc
	heatmap.cwl Generates ATDP heatmap centered on TSS from an array of input BAM files and genelist TSV file. Returns array of heatmap JSON files with the names that have the same basenames as input BAM files, but with .json extension	https://github.com/Barski-lab/workflows.git Path: workflows/heatmap.cwl Branch/Commit ID: b25b17651171f32005e9d879a9a049382f044baf