Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Align reference proteins plane complete workflow	https://github.com/ncbi/pgap.git Path: protein_alignment/wf_protein_alignment.cwl Branch/Commit ID: 8ea3637b0f11eac1ea5599c41d74e00d85fb778d
	count-lines11-wf-noET.cwl	https://github.com/common-workflow-language/cwl-v1.2.git Path: tests/count-lines11-wf-noET.cwl Branch/Commit ID: 1f3ef888d9ef2306c828065c460c1800604f0de4
	spurious_annot pass2	https://github.com/ncbi/pgap.git Path: spurious_annot/wf_spurious_annot_pass2.cwl Branch/Commit ID: 8ea3637b0f11eac1ea5599c41d74e00d85fb778d
	workflow_input_sf_expr.cwl	https://github.com/common-workflow-language/cwl-utils.git Path: testdata/workflow_input_sf_expr.cwl Branch/Commit ID: 0ad6983898f0d9001fe0f416f97c4d8b940e384a
	wgs alignment and germline variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/germline_wgs.cwl Branch/Commit ID: 8438316338e66823e1c9aca9f675b2bf33f2aa59
	gatk4.2.4.1_mutect2_workflow.cwl GATK4.2.4.1 Mutect2 workflow	https://github.com/nci-gdc/gatk4_mutect2_cwl.git Path: subworkflows/gatk4.2.4.1_mutect2_workflow.cwl Branch/Commit ID: cc7d31c9b8e5a0d0be41203513007df2cb341f73
	Run genomic CMsearch	https://github.com/ncbi/pgap.git Path: bacterial_noncoding/wf_gcmsearch.cwl Branch/Commit ID: 2afb5ebafd1353ba063cc74ee9a7eaf347afce5c
	exome alignment and somatic variant detection for cle purpose	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/cle_somatic_exome.cwl Branch/Commit ID: a93be3183c2218ee50f13ae2675dd1cde563fdbc
	genome-kallisto-index.cwl Generates a FASTA file with the DNA sequences for all transcripts in a GFF file and builds kallisto index	https://github.com/Barski-lab/workflows.git Path: tools/genome-kallisto-index.cwl Branch/Commit ID: bc75349ad3a7bdce82b4cd8584501f4d0280bb8d
	WGS and MT analysis for fastq files rna / protein - qc, preprocess, filter, annotation, index, abundance	https://github.com/MG-RAST/pipeline.git Path: CWL/Workflows/wgs-noscreen-fastq.workflow.cwl Branch/Commit ID: 49e29dfc5b1f7a7630831a1052f9136caa29dbf7