Explore Workflows
View already parsed workflows here or click here to add your own
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wf_demultiplex_se.cwl
This workflow takes in single-end reads, and performs the following steps in order: demux_se.cwl (does not actually demux for single end, but mirrors the paired-end processing protocol) |
Path: cwl/wf_demultiplex_se.cwl Branch/Commit ID: master |
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RNASelector as a CWL workflow
https://doi.org/10.1007/s12275-011-1213-z |
Path: workflows/rna-selector.cwl Branch/Commit ID: 43d2fb8 |
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RNA-Seq alignment and transcript/gene abundance workflow
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Path: definitions/pipelines/rnaseq.cwl Branch/Commit ID: downsample_and_recall |
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amplicon_preprocess_workflow.cwl
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Path: script/1-preproccess/amplicon_preprocess_workflow.cwl Branch/Commit ID: master |
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integrity.cwl
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Path: workflows/dnaseq/integrity.cwl Branch/Commit ID: 1.1 |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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Path: workflows/emg-qc-paired.cwl Branch/Commit ID: 3f85843 |
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Modification_workflow.cwl
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Path: Modification_workflow.cwl Branch/Commit ID: master |
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UW GAC (GENESIS) VCF to GDS
**VCF to GDS** workflow converts VCF or BCF files into Genomic Data Structure (GDS) format. GDS files are required by all workflows utilizing the GENESIS or SNPRelate R packages. _Filename requirements_: The input file names should follow the pattern <A>chr<X>.<y> For example: 1KG_phase3_subset_chr1.vcf.gz Some of the tools inside the workflow infer the chromosome number from the file by expecting this pattern of file name. |
Path: vcftogds/vcf-to-gds-wf.cwl Branch/Commit ID: master |
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Runs InterProScan on batches of sequences to retrieve functional annotations.
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Path: workflows/InterProScan-v5-chunked-wf.cwl Branch/Commit ID: cwlexec |
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kallisto-demo.cwl
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Path: workflows/workflows/kallisto-demo.cwl Branch/Commit ID: master |
