Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	ani_top_n	https://github.com/ncbi/pgap.git Path: task_types/tt_ani_top_n.cwl Branch/Commit ID: 49732e54e2fe2eafd2f82df3c482c73e642f6d64
	Cut-n-Run pipeline paired-end Experimental pipeline for Cut-n-Run analysis. Uses mapping results from the following experiment types: - `chipseq-pe.cwl` - `trim-chipseq-pe.cwl` - `trim-atacseq-pe.cwl` Note, the upstream analyses should not have duplicates removed	https://github.com/datirium/workflows.git Path: workflows/trim-chipseq-pe-cut-n-run.cwl Branch/Commit ID: ce058d892d330125cd03d0a0d5fb3b321cda0be3
	xenbase-sra-to-fastq-pe.cwl	https://github.com/datirium/workflows.git Path: subworkflows/xenbase-sra-to-fastq-pe.cwl Branch/Commit ID: 9ee330737f4603e4e959ffe786fbb2046db70a00
	bacterial_screening.cwl	https://github.com/ncbi/pgap.git Path: vecscreen/bacterial_screening.cwl Branch/Commit ID: f5d70f3ad365a2c017fab1c9654c88bc1caf41aa
	wf-loadContents.cwl	https://github.com/common-workflow-language/cwl-v1.2.git Path: tests/wf-loadContents.cwl Branch/Commit ID: 57baec040c99d7edef8242ef51b5470b1c82d733
	exome alignment and somatic variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: 3ee63d8757c341ca98b3b46ec4782862ad19b710
	exome alignment and tumor-only variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/exome.cwl Branch/Commit ID: 051074fce4afd9732ef34db9dd43d3a1d8e979d6
	gcaccess_from_list	https://github.com/ncbi/pgap.git Path: task_types/tt_gcaccess_from_list.cwl Branch/Commit ID: 708e141d99f6e5f30d9402d9f890562606a0d97e
	cram_to_bam workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cram_to_bam_and_index.cwl Branch/Commit ID: ffab5424bb8b5905aecf6f8e2e6387da7f3df562
	trim-rnaseq-se.cwl Runs RNA-Seq BioWardrobe basic analysis with single-end data file.	https://github.com/Barski-lab/workflows.git Path: workflows/trim-rnaseq-se.cwl Branch/Commit ID: dc4ee45ed2c5c30e9a1a173c9ea4445f27d3788a