Explore Workflows

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/step-valuefrom2-wf_v1_1.cwl

Branch/Commit ID: 0ad6983898f0d9001fe0f416f97c4d8b940e384a

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/germline_wgs.cwl

Branch/Commit ID: 0c4855bf23622828413ecb09dd30754691c28014

https://git.astron.nl/RD/LINC.git

Path: workflows/ldv_linc_calibrator.cwl

Branch/Commit ID: 0c5bd78e3f2d08564f5c9a563bcc8bb7704e6202

https://github.com/kids-first/kf-alignment-workflow.git

Path: workflows/kfdrc_qc_wf.cwl

Branch/Commit ID: 9fc3770230e1bd8495f5e6a18665bd21e7c6fafd

https://github.com/ncbi/pgap.git

Path: task_types/tt_ani_top_n.cwl

Branch/Commit ID: 42df0c0f9a4e5697abadd9cb52440691fafc8f5d

Runs ChIP-Seq BioWardrobe basic analysis with paired-end input data files.

https://github.com/Barski-lab/workflows.git

Path: workflows/chipseq-pe.cwl

Branch/Commit ID: d80d4f126eb60579dc3c3faf90996acc802155f2

Cell Ranger Count (RNA+ATAC) Quantifies single-cell gene expression and chromatin accessibility of the sequencing data from a single 10x Genomics library in a combined manner. The results of this workflow are primarily used in either “Single-Cell Multiome ATAC and RNA-Seq Filtering Analysis” or “Cell Ranger Aggregate (RNA+ATAC)” pipelines.

https://github.com/datirium/workflows.git

Path: workflows/cellranger-arc-count.cwl

Branch/Commit ID: 46d3d403ddb240d5a8f4f31ab992b6d6a2686745

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/dynresreq-workflow-stepdefault.cwl

Branch/Commit ID: 9a23706ec061c5d2c02ff60238d218aadf0b5db9

rna / protein - qc, preprocess, filter, annotation, index, abundance

https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/wgs-noscreen-fasta.workflow.cwl

Branch/Commit ID: 1844de830f6935901849ccd9966685fbf13e8042

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/1st-workflow.cwl

Branch/Commit ID: a3d565bf8e630101d25d31804cfbceb0a0ba28de