Explore Workflows

This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json `

https://github.com/david4096/OxoG-Dockstore-Tools.git

Path: oxog_varbam_annotate_wf.cwl

Branch/Commit ID: develop

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/utils/duplicated_readgroup_fix.cwl

Branch/Commit ID: master

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/pipelines/rnaseq.cwl

Branch/Commit ID: No_filters_detect_variants

https://github.com/RoRu/Video-Packager.git

Path: cwl-scripts/guesser/guesser.cwl

Branch/Commit ID: master

https://github.com/EBI-Metagenomics/pipeline-v5.git

Path: workflows/conditionals/amplicon/amplicon-2.cwl

Branch/Commit ID: master

https://github.com/ebi-jdispatcher/webservice-cwl.git

Path: workflows/workflow-fasta-pratt.cwl

Branch/Commit ID: master

https://github.com/vdikan/cwl-gk-thermal.git

Path: cwl/gk-full-step-qeheat.cwl

Branch/Commit ID: master

This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json `

https://github.com/icgc-tcga-pancancer/pcawg-snv-indel-annotation.git

Path: pcawg_annotate_wf.cwl

Branch/Commit ID: develop

https://github.com/4dn-dcic/pipelines-cwl.git

Path: cwl_awsem_v1/hi-c-processing-pairs-nonorm.cwl

Branch/Commit ID: dev2

https://github.com/GeorgeAlehandro/cwl_1_11.git

Path: workflow1_11.cwl

Branch/Commit ID: main

Packed ID: VDJ_Assemble_and_Annotate_Contigs_TCR.cwl