Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph RSeQC workflow or single-end samples

This workflow runs the RSeQC quality control workflow

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/RSeQC/rseqc-bam-qc-SE.cwl

Branch/Commit ID: master
workflow graph count-lines11-wf-noET.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/count-lines11-wf-noET.cwl

Branch/Commit ID: main
workflow graph timelimit3-wf.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/timelimit3-wf.cwl

Branch/Commit ID: main
workflow graph bgzip and index VCF

https://github.com/genome/cancer-genomics-workflow.git

Path: varscan/bgzip_and_index.cwl

Branch/Commit ID: toil_compatibility
workflow graph cond-wf-001.cwl

https://github.com/rabix/benten.git

Path: tests/cwl/cwl-v1.2/cond-wf-001.cwl

Branch/Commit ID: master
workflow graph beast-2step-workflow.cwl

https://github.com/GusEllerm/CWL_workflows.git

Path: workflows/BEAST_examples/beast-2step-workflow.cwl

Branch/Commit ID: main
workflow graph Unaligned to aligned BAM

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/align.cwl

Branch/Commit ID: downsample_and_recall
workflow graph pcawg_oxog_wf.cwl

This workflow will perform OxoG filtering on a set of VCFs. It will produce VCFs and their associated index files.

https://github.com/ICGC-TCGA-PanCancer/pcawg-oxog-filter.git

Path: pcawg_oxog_wf.cwl

Branch/Commit ID: develop
workflow graph Find reads with predicted coding sequences above 60 AA in length

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/orf_prediction.cwl

Branch/Commit ID: f6b5196
workflow graph fp_filter workflow

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/fp_filter.cwl

Branch/Commit ID: downsample_and_recall