Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph module-2

https://github.com/mskcc/roslin-variant.git

Path: setup/cwl/module-2.cwl

Branch/Commit ID: 2.4.x
workflow graph Create Genomic Collection for Bacterial Pipeline

https://github.com/ncbi/pgap.git

Path: genomic_source/wf_genomic_source.cwl

Branch/Commit ID: master
workflow graph EMG pipeline v4.0 (paired end version)

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v4-paired.cwl

Branch/Commit ID: master
workflow graph cond-wf-003.1.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/conditionals/cond-wf-003.1.cwl

Branch/Commit ID: main
workflow graph Subworkflow that runs cnvkit in single sample mode and returns a vcf file

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/cnvkit_single_sample.cwl

Branch/Commit ID: downsample_and_recall
workflow graph CNV_pipeline

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/workflow.cwl

Branch/Commit ID: 1.0.6
workflow graph qc_workflow.cwl

https://github.com/andurill/ACCESS-Pipeline.git

Path: workflows/QC/qc_workflow.cwl

Branch/Commit ID: 0.0.33_dmp
workflow graph qiime2 create feature visual summaries

FeatureTable and FeatureData summaries from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-dada2-paired.cwl

Branch/Commit ID: qiime2-workflow-paired

Packed ID: qiime2-04-features.cwl
workflow graph wf3.cwl

https://github.com/RenskeW/cwlprov-provenance.git

Path: sl_prov_question/scenario3/wf3.cwl

Branch/Commit ID: main
workflow graph mpi_simple_wf.cwl

Simple 2 step workflow to check that workflow steps are independently picking up on the number of processes. First run the parallel get PIDs step (on the input num procs) then run (on a single proc) the line count. This should equal the input.

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/mpi_simple_wf.cwl

Branch/Commit ID: main