Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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heatmap.cwl
Generates ATDP heatmap centered on TSS from an array of input BAM files and genelist TSV file. Returns array of heatmap JSON files with the names that have the same basenames as input BAM files, but with .json extension |
https://github.com/datirium/workflows.git
Path: workflows/heatmap.cwl Branch/Commit ID: cb5e5b8563be4977e9f2babc14fe084faa234847 |
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gp_makeblastdb
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https://github.com/ncbi/pgap.git
Path: progs/gp_makeblastdb.cwl Branch/Commit ID: f18c1dce463509170ee3bf2844d5a3637ff706f5 |
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readgroups_bam_to_readgroups_fastq_lists.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/readgroups_bam_to_readgroups_fastq_lists.cwl Branch/Commit ID: 6b43e8b03256492f2b36ffcf548704daaafee6f6 |
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bacterial_kmer
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https://github.com/ncbi/pgap.git
Path: bacterial_kmer/wf_bacterial_kmer.cwl Branch/Commit ID: 54c5074587af001a44eccb4762a4cb25fa24cb3e |
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transform.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/transform.cwl Branch/Commit ID: 6b43e8b03256492f2b36ffcf548704daaafee6f6 |
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extract_readgroup_fastq_pe.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/extract_readgroup_fastq_pe.cwl Branch/Commit ID: 6b43e8b03256492f2b36ffcf548704daaafee6f6 |
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extract_capture_kit.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/extract_capture_kit.cwl Branch/Commit ID: 6b43e8b03256492f2b36ffcf548704daaafee6f6 |
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bacterial_kmer
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https://github.com/ncbi/pgap.git
Path: bacterial_kmer/wf_bacterial_kmer.cwl Branch/Commit ID: a33936cca222084cf68e00076255359688b6708a |
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Align reference proteins plane complete workflow, with miniprot
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_protein_alignment_miniprot.cwl Branch/Commit ID: 2afb5ebafd1353ba063cc74ee9a7eaf347afce5c |
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checkm
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https://github.com/ncbi/pgap.git
Path: checkm/wf_checkm.cwl Branch/Commit ID: 2afb5ebafd1353ba063cc74ee9a7eaf347afce5c |
