Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Replace legacy AML Trio Assay	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/aml_trio_cle.cwl Branch/Commit ID: 5be54bf09092c53e6c7797a875f64a360d511d7f
	Cellranger reanalyze - reruns secondary analysis performed on the feature-barcode matrix Devel version of Single-Cell Cell Ranger Reanalyze ================================================== Workflow calls \"cellranger aggr\" command to rerun secondary analysis performed on the feature-barcode matrix (dimensionality reduction, clustering and visualization) using different parameter settings. As an input we use filtered feature-barcode matrices in HDF5 format from cellranger count or aggr experiments. Note, we don't pass aggregation_metadata from the upstream cellranger aggr step. Need to address this issue when needed.	https://github.com/datirium/workflows.git Path: workflows/cellranger-reanalyze.cwl Branch/Commit ID: e99e80a2c19682d59947bde04a892d7b6d90091c
	Varscan Workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: 0a9a4ce83b49ed4e7eee5bcc09d83725136a36b0
	kfdrc_bwamem_subwf.cwl	https://github.com/kids-first/kf-alignment-workflow.git Path: workflows/dev/ultra-opt/kfdrc_bwamem_subwf.cwl Branch/Commit ID: 9fc3770230e1bd8495f5e6a18665bd21e7c6fafd
	md5sum.cwl	https://github.com/common-workflow-language/cwl-utils.git Path: testdata/md5sum.cwl Branch/Commit ID: c1875d54dedc41b1d2fa08634dcf1caa8f1bc631
	Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_ab_initio_training.cwl Branch/Commit ID: 2afb5ebafd1353ba063cc74ee9a7eaf347afce5c
	stdout-wf_v1_0.cwl	https://github.com/common-workflow-language/cwl-utils.git Path: testdata/stdout-wf_v1_0.cwl Branch/Commit ID: e78db9870cb744fe36674f43b3223c688e9989e1
	cram_to_bam workflow	https://github.com/apaul7/cancer-genomics-workflow.git Path: definitions/subworkflows/cram_to_bam_and_index.cwl Branch/Commit ID: bfcb5ffbea3d00a38cc03595d41e53ea976d599d
	Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/pvacseq.cwl Branch/Commit ID: 3ee63d8757c341ca98b3b46ec4782862ad19b710
	dynresreq-workflow-tooldefault.cwl	https://github.com/common-workflow-language/cwl-v1.2.git Path: tests/dynresreq-workflow-tooldefault.cwl Branch/Commit ID: e62f99dd79d6cb9c157cceb458f74200da84f6e9