Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
SoupX - an R package for the estimation and removal of cell free mRNA contamination
Devel version of Single-Cell Advanced Cell Ranger Pipeline (SoupX) ================================================================= |
https://github.com/datirium/workflows.git
Path: workflows/soupx.cwl Branch/Commit ID: 7eef0294395d83ff0765fce61726a59d71126422 |
|
|
|
step_valuefrom5_wf_v1_0.cwl
|
https://github.com/common-workflow-language/cwl-utils.git
Path: testdata/step_valuefrom5_wf_v1_0.cwl Branch/Commit ID: 124a08ce3389eb49066c34a4163cbbed210a0355 |
|
|
|
Feature expression merge - combines feature expression from several experiments
Feature expression merge - combines feature expression from several experiments ========================================================================= Workflows merges RPKM (by default) gene expression from several experiments based on the values from GeneId, Chrom, TxStart, TxEnd and Strand columns (by default). Reported unique columns are renamed based on the experiments names. |
https://github.com/datirium/workflows.git
Path: workflows/feature-merge.cwl Branch/Commit ID: 30031ca5e69cec603c4733681de54dc7bffa20a3 |
|
|
|
step-valuefrom-wf.cwl
|
https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/step-valuefrom-wf.cwl Branch/Commit ID: 1f3ef888d9ef2306c828065c460c1800604f0de4 |
|
|
|
directory.cwl
Inspect provided directory and return filenames. Generate a new directory and return it (including content). |
https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/directory.cwl Branch/Commit ID: f94719e862f86cc88600caf3628faba6c0d05042 |
|
|
|
Apply filters to VCF file
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/filter_vcf.cwl Branch/Commit ID: e59c77629936fad069007ba642cad49fef7ad29f |
|
|
|
step2: trimming fastq files (paired-end)
multiple fastq files trimming process using fastp version 0.23.4 and scatter feature requirement |
https://github.com/RyoNozu/CWL4IncorporateTSSintoGXF.git
Path: workflow/01_trimming_fastq_subworkflow_pe.cwl Branch/Commit ID: 9728a86f7b73f7657a1f261e77a14ca59bdd561b |
|
|
|
sum-wf.cwl
|
https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/sum-wf.cwl Branch/Commit ID: b82ce7ae901a54c7a062fd5eefd8d5ceb5a4d684 |
|
|
|
scatter-wf1.cwl
|
https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/scatter-wf1.cwl Branch/Commit ID: 2256a30d0c1365b30e0a7338fb883c74674fcd25 |
|
|
|
basename-fields-test.cwl
|
https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/basename-fields-test.cwl Branch/Commit ID: 8010fd2bf1e7090ba6df6ca8c84bbb96e2272d32 |
