Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Unaligned BAM to BQSR and VCF	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl Branch/Commit ID: e509210450e4c62aecb99a228fc97f0eae2d9580
	Salmon quantification, FASTQ -> H5AD count matrix	https://github.com/hubmapconsortium/salmon-rnaseq.git Path: steps/salmon-quantification.cwl Branch/Commit ID: c826ad231abf50c99ef9539ba7a173c071f7b2a7
	concat.cwl	https://git.astron.nl/RD/LINC.git Path: workflows/linc_target/concat.cwl Branch/Commit ID: 322fbb6db100df49881edd4d1db4e9a8e7e3715b
	sec-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/sec-wf.cwl Branch/Commit ID: f1661438c07671b4738b1cad88c58b80541a76af
	packed_no_main.cwl#collision	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/packed_no_main.cwl Branch/Commit ID: 9cda157cb4380e9d30dec29f0452c56d0c10d064 Packed ID: collision
	count-lines1-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/count-lines1-wf.cwl Branch/Commit ID: fc6ca8b1498926f705dcfde7ab0a365bd09a9675
	kmer_cache_store	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_cache_store.cwl Branch/Commit ID: 22ffe27d9d4a899def7592d75d5871c1856adbdb
	ani_top_n	https://github.com/ncbi/pgap.git Path: task_types/tt_ani_top_n.cwl Branch/Commit ID: 22ffe27d9d4a899def7592d75d5871c1856adbdb
	merge-bam-parallel This workflow merge BAM files per condition in parallel	https://github.com/ncbi/cwl-ngs-workflows-cbb.git Path: workflows/File-formats/merge-bam-parallel.cwl Branch/Commit ID: 0207b0171ab142dfb85db9c39050c5b4be51dd9e
	record-output-wf_v1_0.cwl	https://github.com/common-workflow-language/cwl-utils.git Path: testdata/record-output-wf_v1_0.cwl Branch/Commit ID: afc644e143c697aefc006e7b94bc460e594fc588