Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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aws_freebayes.cwl
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https://github.com/uc-cdis/genomel_pipelines.git
Path: genomel/cwl/workflows/variant_calling/aws_freebayes.cwl Branch/Commit ID: master |
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star-cufflinks_wf_se.cwl
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https://github.com/pitagora-network/pitagora-cwl.git
Path: workflows/star-cufflinks/single_end/star-cufflinks_wf_se.cwl Branch/Commit ID: master |
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pindel parallel workflow
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https://github.com/ChrisMaherLab/PACT.git
Path: subworkflows/pindel.cwl Branch/Commit ID: master |
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Indices builder from GBOL RDF (TTL)
Workflow to build different indices for different tools from a genome and transcriptome. This workflow expects an (annotated) genome in GBOL ttl format. Steps: - SAPP: rdf2gtf (genome fasta) - SAPP: rdf2fasta (transcripts fasta) - STAR index (Optional for Eukaryotic origin) - bowtie2 index - kallisto index |
https://git.wur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_indexbuilder.cwl Branch/Commit ID: master |
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ST520114.cwl
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https://github.com/Marco-Salvi/cwl-ro-crate.git
Path: ST520114.cwl Branch/Commit ID: main |
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EMG assembly for paired end Illumina
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-assembly.cwl Branch/Commit ID: 0cf06f1 |
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workflow.cwl
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https://gitlab.ebrains.eu/sofiakar/yre-standardised-workflows.git
Path: Workflows/PSD_workflow_smr_2/workflow.cwl Branch/Commit ID: poster |
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checkm
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https://github.com/ncbi/pgap.git
Path: checkm/wf_checkm.cwl Branch/Commit ID: test |
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echo-wc.cwl
Counts words of a message via echo and wc |
https://github.com/NLeSC/scriptcwl.git
Path: tests/data/workflows/echo-wc.cwl Branch/Commit ID: master |
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bulk-atac-seq-pipeline.cwl
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https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git
Path: bulk-atac-seq-pipeline.cwl Branch/Commit ID: 3da5dd0 |
