Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.	https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git Path: workflows/emg-qc-paired.cwl Branch/Commit ID: 3f85843
	CRAM_md5sum_checker_wrapper.cwl This wraps the md5sum tool with a checker workflow that runs both the tool and a tool that performs verification of results	https://github.com/DataBiosphere/toolbox.git Path: CRAM-no-header-md5sum/CRAM_md5sum_checker_wrapper.cwl Branch/Commit ID: 1.30.0
	CRAM_md5sum.cwl	https://github.com/DataBiosphere/topmed-workflows.git Path: CRAM-no-header-md5sum/md5sum/CRAM_md5sum.cwl Branch/Commit ID: 1.19.0
	bwameth_align_merge_sort_dedup.cwl	https://github.com/ifishlin/Benchmarking_CWL.git Path: workflows/bwameth/tools/bwameth_align_merge_sort_dedup.cwl Branch/Commit ID: main
	pipeline.cwl	https://github.com/hubmapconsortium/spatial-transcriptomics-pipeline.git Path: pipeline.cwl Branch/Commit ID: master
	canine_mutect2_module.cwl	https://github.com/d3b-center/canine-dev.git Path: subworkflows/canine_mutect2_module.cwl Branch/Commit ID: master
	Gathered Downsample and HaplotypeCaller	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/gathered_downsample_and_recall.cwl Branch/Commit ID: master
	Detect Docm variants	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/docm_cle.cwl Branch/Commit ID: master
	index sim seq create sorted / filtered similarity file with feature sequences, and index by md5	https://github.com/MG-RAST/pipeline.git Path: CWL/Workflows/index_sim_seq.workflow.cwl Branch/Commit ID: master
	Unaligned bam to sorted, markduped bam	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/align_sort_markdup.cwl Branch/Commit ID: master

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