Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
BD Rhapsody™ WTA Analysis Pipeline
The BD Rhapsody™ WTA Analysis Pipeline is used to create sequencing libraries from single cell transcriptomes without having to specify a targeted panel. After sequencing, the analysis pipeline takes the FASTQ files, a reference genome file and a transcriptome annotation file for gene alignment. The pipeline generates molecular counts per cell, read counts per cell, metrics, and an alignment file. |
https://github.com/longbow0/cwl.git
Path: v1.8/rhapsody_wta_1.8.cwl Branch/Commit ID: master Packed ID: main |
|
|
|
scRNA-seq pipeline using Salmon and Alevin
|
https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: pipeline.cwl Branch/Commit ID: 4bb798e |
|
|
|
bulk scRNA-seq pipeline using Salmon
|
https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: bulk-pipeline.cwl Branch/Commit ID: 536d6ed |
|
|
|
count-lines1-wf-noET.cwl
|
https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/count-lines1-wf-noET.cwl Branch/Commit ID: main |
|
|
|
workflow_vs.cwl
|
https://github.com/sapojnik/av_screen_x.git
Path: progs/workflow_vs.cwl Branch/Commit ID: main |
|
|
|
CNV_pipeline
|
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/workflow.cwl Branch/Commit ID: 1.1.3 |
|
|
|
Vcf concordance evaluation workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/vcf_eval_concordance.cwl Branch/Commit ID: master |
|
|
|
waltz_workflow_all_bams.cwl
|
https://github.com/andurill/ACCESS-Pipeline.git
Path: workflows/waltz/waltz_workflow_all_bams.cwl Branch/Commit ID: 0.0.33_dmp |
|
|
|
module-3.cwl
|
https://github.com/mskcc/Innovation-Pipeline.git
Path: workflows/module-3.cwl Branch/Commit ID: master |
|
|
|
nontrivial.cwl
|
https://github.com/dockstore-testing/tooltester-wes-testing.git
Path: nontrivial/nontrivial.cwl Branch/Commit ID: main |
