Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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preprocessing for metagenomic short reads
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https://github.com/EBI-Metagenomics/CWL-assembly.git
Path: src/workflows/metagenome_qc.cwl Branch/Commit ID: master |
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find_hotspots_in_normals.cwl
Workflow to find hotspot VAFs from duplex (for Tumor sample) and unfiltered (for Normal sample) pileups. These inputs are all required to be sorted in the same order: sample_ids patient_ids sample_classes unfiltered_pileups duplex_pileups |
https://github.com/mskcc/access-pipeline.git
Path: workflows/subworkflows/find_hotspots_in_normals.cwl Branch/Commit ID: master |
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ValidateParameterByDataComparision
Validation by comparing simulation parameter with calibration or laboratory data values. Might include statistical evaluation of differences, plotting, or expert review. |
https://github.com/gammasim/workflows.git
Path: workflows/ValidateParameterByDataComparision.cwl Branch/Commit ID: main |
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Subworkflow to allow calling different SV callers which require bam files as inputs
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: 0d2f354af9192a56af258a7d2426c7c160f4ec1a |
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io-int-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/io-int-wf.cwl Branch/Commit ID: main |
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Bacterial Annotation, pass 4, blastp-based functional annotation (second pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass4.cwl Branch/Commit ID: master |
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wf-loadContents.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/wf-loadContents.cwl Branch/Commit ID: master |
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03-map-pe.cwl
ATAC-seq 03 mapping - reads: PE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/03-map-pe.cwl Branch/Commit ID: master |
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dicom-workflow.cwl
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https://github.com/afmam/dicom-cwl.git
Path: dicom-workflow.cwl Branch/Commit ID: main |
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predictions.cwl
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https://github.com/simleo/workflow-run-crate.git
Path: docs/examples/draft/ml-predict-pipeline-streamflow/predictions.cwl Branch/Commit ID: main |