Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph qc_workflow_wo_waltz.cwl

This workflow is intended to be used to test the QC module, without having to run the long waltz step

https://github.com/mskcc/Innovation-Pipeline.git

Path: workflows/QC/qc_workflow_wo_waltz.cwl

Branch/Commit ID: master
workflow graph Per-region pindel

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/pindel_cat.cwl

Branch/Commit ID: master
workflow graph module-1-2-chunk

https://github.com/mskcc/roslin-variant.git

Path: setup/cwl/module-1-2.chunk.cwl

Branch/Commit ID: 2.4.x
workflow graph Unaligned to aligned BAM

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/align.cwl

Branch/Commit ID: master
workflow graph pcr-bottleneck-coef.cwl

ChIP-seq - map - PCR Bottleneck Coefficients

 https://github.com/duke-gcb/ggr-cwl.git

Path: v1.0/map/pcr-bottleneck-coef.cwl

Branch/Commit ID: v1.0.0
workflow graph umi per-lane alignment subworkflow

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/subworkflows/umi_alignment.cwl

Branch/Commit ID: No_filters_detect_variants
workflow graph qc_aggregator

https://github.com/msk-access/qc_generation.git

Path: aggregate_visualize__packed.cwl

Branch/Commit ID: develop

Packed ID: qc_aggregator.cwl
workflow graph rna_seq_workflow_2.cwl

https://github.com/alexiswl/novice-tutorial-exercises.git

Path: rna_seq_workflow_2.cwl

Branch/Commit ID: main
workflow graph bqsr-distr.cwl

https://github.com/Sentieon/Sentieon-cwl.git

Path: stage/bqsr-distr.cwl

Branch/Commit ID: master
workflow graph EMG pipeline v3.0 (single end version)

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3.cwl

Branch/Commit ID: 0cd2d70