Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph mpi_simple_wf.cwl

Simple 2 step workflow to check that workflow steps are independently picking up on the number of processes. First run the parallel get PIDs step (on the input num procs) then run (on a single proc) the line count. This should equal the input.

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/mpi_simple_wf.cwl

Branch/Commit ID: main
workflow graph word-mapping-test-files-wf.cwl#main

https://github.com/KBNLresearch/ochre.git

Path: ochre/cwl/word-mapping-test-files-wf.cwl

Branch/Commit ID: 9f33fb8a059b6a75646c82edcd91b6beb645894f

Packed ID: main
workflow graph Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/pvacseq.cwl

Branch/Commit ID: low-vaf
workflow graph super-enhancer.cwl

Both `islands_file` and `islands_control_file` should be produced by the same cwl tool (iaintersect.cwl or macs2-callpeak-biowardrobe-only.cwl)

https://github.com/Barski-lab/workflows.git

Path: workflows/super-enhancer.cwl

Branch/Commit ID: master
workflow graph contam_euk.cwl

https://github.com/NCBI-Hackathons/ContamFilter.git

Path: cwl/workflow/contam_euk.cwl

Branch/Commit ID: master
workflow graph wf-loadContents4.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/wf-loadContents4.cwl

Branch/Commit ID: main
workflow graph protein annotation

Proteins - predict, filter, cluster, identify, annotate

 https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/protein-filter-annotation.workflow.cwl

Branch/Commit ID: master
workflow graph l1b_workflow.cwl

https://github.com/unity-sds/sounder-sips-application.git

Path: cwl/l1b_workflow.cwl

Branch/Commit ID: main
workflow graph cat_fastq.cwl

https://github.com/ngs-mstb/micgent.git

Path: python/lib/MICGENT/data/cwl/cat_fastq.cwl

Branch/Commit ID: master
workflow graph step-valuefrom3-wf.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/step-valuefrom3-wf.cwl

Branch/Commit ID: main