Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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step-valuefrom5-wf.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/step-valuefrom5-wf.cwl Branch/Commit ID: master |
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germline-gpu-v4.2.0.cwl
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https://github.com/NCGM-genome/WGSpipeline.git
Path: Workflows/germline-gpu-v4.2.0.cwl Branch/Commit ID: main |
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annotator_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
https://github.com/david4096/OxoG-Dockstore-Tools.git
Path: annotator_sub_wf.cwl Branch/Commit ID: develop |
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Spliced RNAseq workflow
Workflow for Spliced RNAseq data Steps: - workflow_illumina_quality: - FastQC (Read Quality Control) - fastp (Read Trimming) - STAR (Read mapping) - featurecounts (transcript read counts) - kallisto (transcript [pseudo]counts) |
https://git.wur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_RNAseq_Spliced.cwl Branch/Commit ID: master |
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L2_SP.cwl
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https://github.com/CS-SI/chronos-demo.git
Path: cwl/L2_SP.cwl Branch/Commit ID: f4dff46 |
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Replace legacy AML Trio Assay
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/aml_trio_cle.cwl Branch/Commit ID: downsample_and_recall |
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SSU-from-tablehits.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: c1f8b22 |
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EMG assembly for paired end Illumina
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v4-assembly-metaSPAdes.cwl Branch/Commit ID: master |
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snps_and_indels.cwl
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https://github.com/mskcc/ACCESS-Pipeline.git
Path: workflows/subworkflows/snps_and_indels.cwl Branch/Commit ID: master |
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tRNA_selection.cwl
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https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: tools/tRNA_selection.cwl Branch/Commit ID: ca6ca613 |
