Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	QIIME2 Step 2 (DADA2 option) QIIME2 DADA2, feature summaries, phylogenetic diversity tree, taxonomic analysis and ancom	https://github.com/bespin-workflows/16s-qiime2.git Path: 16s-step2-dada2-paired.cwl Branch/Commit ID: develop
	04-peakcall-pe.cwl ATAC-seq 04 quantification - PE	https://github.com/Duke-GCB/GGR-cwl.git Path: v1.0/ATAC-seq_pipeline/04-peakcall-pe.cwl Branch/Commit ID: master
	Bacterial Annotation, ab initio (first pass) searched against AntiFam	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_ab_initio_antifam.cwl Branch/Commit ID: test
	bam to trimmed fastqs and biscuit alignments	https://github.com/apaul7/cancer-genomics-workflow.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl Branch/Commit ID: low-vaf
	collate_unique_SSU_headers.cwl	https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: f993cad
	image_workflow.cwl	https://github.com/peijin94/LOFAR-Sun-tools.git Path: utils/IM/LINC/lincSun/workflow/image_workflow.cwl Branch/Commit ID: master
	step2: trimming fastq files (paired-end) multiple fastq files trimming process using fastp version 0.23.4 and scatter feature requirement	https://github.com/RyoNozu/CWL4IncorporateTSSintoGXF.git Path: workflow/01_trimming_fastq_subworkflow_pe.cwl Branch/Commit ID: main
	WGS and MT analysis for fastq files rna / protein - qc, preprocess, filter, annotation, index, abundance	https://github.com/MG-RAST/pipeline.git Path: CWL/Workflows/wgs-fastq.workflow.cwl Branch/Commit ID: master
	record-output-wf_v1_2.cwl	https://github.com/common-workflow-language/cwl-utils.git Path: testdata/record-output-wf_v1_2.cwl Branch/Commit ID: 513bf79c9e3ba98306006a87165de18bac7c04ee
	oc-workflow.cwl	https://github.com/karchinlab/opencravat-cwl.git Path: oc-workflow.cwl Branch/Commit ID: master