- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
fastq1 | File[] | ||
fastq2 | File[] | ||
threads_fastp | Integer (Optional) | ||
threads_fastqc | Integer (Optional) |
Steps
There are no steps in this workflow
Outputs
ID | Type | Label | Doc |
---|---|---|---|
paired_R1 | File[] | ||
paired_R2 | File[] | ||
html_report | File[] | ||
json_report | File[] | ||
unpaired_R1 | File[] | ||
unpaired_R2 | File[] | ||
fastqc_raw_zip | File[] | ||
fastqc_raw_html | File[] | ||
fastqc_paired_zip | File[] | ||
fastqc_paired_html | File[] |
Permalink:
https://w3id.org/cwl/view/git/8ca112300d819e3a24a78483685adc42d6199e46/structuralvariants/subworkflows/trimmed_fastq.cwl