Workflow: cnv_codex
Fetched 2023-01-03 21:18:15 GMT
Verified with cwltool version 3.1.20221201130942
CNV CODEX2 calling
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| bed | File | ||
| bams | File[] | ||
| max_len | String | ||
| min_len | String | ||
| samples | File | ||
| chromosome | String | ||
| min_lratio | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| codex_merge |
../tools/merge.cwl
(CommandLineTool)
|
merge |
Merge BED file |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| output | File |
Permalink:
https://w3id.org/cwl/view/git/70eec658fd1b92c4d0e3b24146820010b5983d41/structuralvariants/subworkflows/cnv_codex.cwl
