Workflow: bwa_mem
Fetched 2025-12-30 19:48:35 GMT
Verified with cwltool version 3.1.20230201224320
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This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| threads | Integer (Optional) | ||
| paired_R1 | File | ||
| paired_R2 | File | ||
| read_group | String (Optional) | ||
| unpaired_R1 | File | ||
| unpaired_R2 | File | ||
| reference_fasta | File |
Steps
There are no steps in this workflow
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| output_paired | File | ||
| output_unpairedR1 | File | ||
| output_unpairedR2 | File |
Permalink:
https://w3id.org/cwl/view/git/6f16906b30adad5136b0c8135d1e7c07c5741763/structuralvariants/cwl/subworkflows/bwa_mem.cwl
