Workflow: bwa_index
Fetched 2026-10-13 06:27:04 GMT
Verified with cwltool version 3.1.20230201224320
Modified from https://github.com/kids-first/kf-somatic-workflow/blob/master/sub_workflows/prepare_reference.cwl
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- Default Values
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- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| algoType | String (Optional) | ||
| reference_sa | File (Optional) | ||
| reference_amb | File (Optional) | ||
| reference_ann | File (Optional) | ||
| reference_bwt | File (Optional) | ||
| reference_fai | File (Optional) | ||
| reference_pac | File (Optional) | ||
| reference_fasta | File | ||
| generate_bwa_indexes | Boolean (Optional) |
Steps
There are no steps in this workflow
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| output | File |
Permalink:
https://w3id.org/cwl/view/git/6f16906b30adad5136b0c8135d1e7c07c5741763/structuralvariants/cwl/subworkflows/bwa_index.cwl
