Workflow: trimmed_fastq
Fetched 2023-01-04 17:06:35 GMT
Verified with cwltool version 3.1.20221201130942
Quality Control and Raw Data trimming
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| fastq1 | File[] | ||
| fastq2 | File[] | ||
| threads_fastp | Integer (Optional) | ||
| threads_fastqc | Integer (Optional) |
Steps
There are no steps in this workflow
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| paired_R1 | File[] | ||
| paired_R2 | File[] | ||
| html_report | File[] | ||
| json_report | File[] | ||
| unpaired_R1 | File[] | ||
| unpaired_R2 | File[] | ||
| fastqc_raw_zip | File[] | ||
| fastqc_raw_html | File[] | ||
| fastqc_paired_zip | File[] | ||
| fastqc_paired_html | File[] |
Permalink:
https://w3id.org/cwl/view/git/1a8c6bc41c83476a5496bbaca5c3d870cfd8c21e/structuralvariants/subworkflows/trimmed_fastq.cwl
