Workflow: cram-get-fasta.cwl
Fetched 2024-04-26 12:02:25 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
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- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| input_cram | File | ||
| ref_fasta_files | File[] |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| samtools_dict |
../tools/samtools/samtools-dict.cwl
(CommandLineTool)
|
||
| samtools_faidx |
../tools/samtools/samtools-faidx.cwl
(CommandLineTool)
|
||
| samtools_fastaref |
../tools/samtools/samtools-fastaref.cwl
(CommandLineTool)
|
||
| combine_reference_files |
../expression-tools/combine_files.cwl
(ExpressionTool)
|
Step to put secondary input files in the same folder as a main file |
|
| samtools_seq_cache_populate |
../tools/samtools_seq_cache_populate.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| reference_dict | File | ||
| reference_fasta | File |
Permalink:
https://w3id.org/cwl/view/git/c822e40575ecd7fc65626a73363f3bbc193b9a74/cwl/workflows/cram-get-fasta.cwl
